Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08100

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
1,515,482	+				+0.5
1,515,483	-				+1.5
1,515,483	-				+0.5
1,515,550	+		LU632_RS08095	0.38	+0.9
1,515,581	-		LU632_RS08095	0.51	-2.1
1,515,581	-		LU632_RS08095	0.51	+0.2
1,515,581	-		LU632_RS08095	0.51	+0.1
1,515,581	-		LU632_RS08095	0.51	-1.0
1,515,581	-		LU632_RS08095	0.51	+0.3
1,515,727	-				+0.5
1,515,728	+				-0.3
1,515,780	+				-0.0
1,515,803	+				+0.8
1,516,073	+	elaB	LU632_RS08100	0.60	-1.4
1,516,074	-	elaB	LU632_RS08100	0.60	-0.5
1,516,074	-	elaB	LU632_RS08100	0.60	-1.1
1,516,077	-	elaB	LU632_RS08100	0.61	-0.1
1,516,077	-	elaB	LU632_RS08100	0.61	+2.8
1,516,080	-	elaB	LU632_RS08100	0.62	+0.2
1,516,099	+	elaB	LU632_RS08100	0.68	-0.5
1,516,100	-	elaB	LU632_RS08100	0.68	+0.6
1,516,233	+				-0.7
1,516,243	+				+1.7
1,516,256	+				-1.5
1,516,257	-				+0.5
1,516,409	-				+0.5
1,516,417	+				-3.0
1,516,488	+				+0.1
1,516,488	+				-1.8
1,516,496	+				-3.4
1,516,496	+				+1.3
1,516,496	+				+0.6
1,516,498	+				-0.1
1,516,531	-				-1.1
1,516,531	-				-1.2
1,516,599	-				-1.5
1,516,599	-				+0.3
1,516,665	+				+0.8
1,516,666	-				-1.8
1,516,812	+	menD	LU632_RS08105	0.17	+1.7
1,516,887	+	menD	LU632_RS08105	0.21	-1.0
1,516,887	+	menD	LU632_RS08105	0.21	+1.2
1,516,932	+	menD	LU632_RS08105	0.24	+0.6
1,516,933	-	menD	LU632_RS08105	0.24	+0.6
1,517,153	+	menD	LU632_RS08105	0.37	-0.6