Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07865

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
1,468,212	-				-0.3
1,468,214	+				+1.4
1,468,230	+				+2.2
1,468,234	+				-0.5
1,468,235	-				-1.0
1,468,254	+				-1.5
1,468,301	+				-0.5
1,468,311	-				-1.8
1,468,381	+				+2.0
1,468,646	+				-1.8
1,468,646	+				-1.5
1,468,646	+				-0.6
1,468,646	+				-2.5
1,468,647	-				-0.5
1,468,654	+				+0.2
1,468,659	+				-4.0
1,468,659	+				-0.5
1,468,660	-				-1.0
1,468,726	+	cvpA	LU632_RS07860	0.20	-1.1
1,468,726	+	cvpA	LU632_RS07860	0.20	-0.7
1,468,727	-	cvpA	LU632_RS07860	0.20	+0.5
1,468,727	-	cvpA	LU632_RS07860	0.20	-1.5
1,468,760	+	cvpA	LU632_RS07860	0.27	-0.6
1,468,763	+	cvpA	LU632_RS07860	0.28	-1.8
1,468,764	-	cvpA	LU632_RS07860	0.28	-2.8
1,468,840	+	cvpA	LU632_RS07860	0.44	-2.5
1,469,057	+				+0.7
1,469,058	-				+0.8
1,469,058	-				-0.2
1,469,081	+				+0.0
1,469,081	+				+0.4
1,469,092	+				-1.5
1,469,093	-				-2.0
1,469,093	-				-4.4
1,469,164	-				-5.8
1,469,207	-				-1.8
1,469,207	-				-1.8
1,469,225	+				-3.3
1,469,226	-				-4.7
1,469,226	-				+0.5
1,469,343	+	purF	LU632_RS07865	0.12	-2.3
1,469,343	+	purF	LU632_RS07865	0.12	-1.5
1,469,343	+	purF	LU632_RS07865	0.12	-1.8
1,469,356	-	purF	LU632_RS07865	0.13	-2.6
1,469,557	-	purF	LU632_RS07865	0.26	-0.5
1,469,591	-	purF	LU632_RS07865	0.29	-5.8
1,469,767	+	purF	LU632_RS07865	0.40	-1.8
1,469,767	+	purF	LU632_RS07865	0.40	-3.9
1,469,767	+	purF	LU632_RS07865	0.40	-4.1
1,469,767	+	purF	LU632_RS07865	0.40	-6.4
1,469,768	-	purF	LU632_RS07865	0.40	-2.8
1,469,768	-	purF	LU632_RS07865	0.40	-5.8
1,469,769	+	purF	LU632_RS07865	0.40	-4.7
1,469,769	+	purF	LU632_RS07865	0.40	-4.4
1,469,769	+	purF	LU632_RS07865	0.40	-5.6
1,469,769	+	purF	LU632_RS07865	0.40	-3.2
1,469,769	+	purF	LU632_RS07865	0.40	-3.6
1,469,769	+	purF	LU632_RS07865	0.40	-4.3
1,469,770	-	purF	LU632_RS07865	0.41	-5.2
1,469,770	-	purF	LU632_RS07865	0.41	-2.8
1,469,770	-	purF	LU632_RS07865	0.41	-2.9
1,469,804	+	purF	LU632_RS07865	0.43	-3.5
1,469,804	+	purF	LU632_RS07865	0.43	-6.2
1,469,805	-	purF	LU632_RS07865	0.43	-3.9
1,469,848	+	purF	LU632_RS07865	0.46	-2.6
1,469,848	+	purF	LU632_RS07865	0.46	-3.3
1,469,849	-	purF	LU632_RS07865	0.46	-3.5
1,469,905	-	purF	LU632_RS07865	0.49	-5.5
1,469,905	-	purF	LU632_RS07865	0.49	-3.2
1,469,923	+	purF	LU632_RS07865	0.51	-4.6
1,469,923	+	purF	LU632_RS07865	0.51	-1.5
1,469,924	-	purF	LU632_RS07865	0.51	-4.7
1,469,971	+	purF	LU632_RS07865	0.54	-6.2
1,469,989	-	purF	LU632_RS07865	0.55	-0.5
1,470,041	+	purF	LU632_RS07865	0.58	-2.5
1,470,041	+	purF	LU632_RS07865	0.58	-6.0
1,470,041	+	purF	LU632_RS07865	0.58	-4.2
1,470,042	-	purF	LU632_RS07865	0.58	-4.9
1,470,159	+	purF	LU632_RS07865	0.66	-3.0
1,470,159	+	purF	LU632_RS07865	0.66	-5.5
1,470,159	+	purF	LU632_RS07865	0.66	-3.7
1,470,160	-	purF	LU632_RS07865	0.66	-1.5
1,470,160	-	purF	LU632_RS07865	0.66	-1.0
1,470,207	+	purF	LU632_RS07865	0.69	+0.5
1,470,252	-	purF	LU632_RS07865	0.72	-5.7
1,470,328	+	purF	LU632_RS07865	0.77	-2.2
1,470,329	-	purF	LU632_RS07865	0.77	-2.8
1,470,381	+	purF	LU632_RS07865	0.81	-4.3
1,470,382	-	purF	LU632_RS07865	0.81	+0.5
1,470,382	-	purF	LU632_RS07865	0.81	-0.5
1,470,382	-	purF	LU632_RS07865	0.81	-3.8
1,470,382	-	purF	LU632_RS07865	0.81	-3.0
1,470,551	-				-3.9
1,470,578	-				-1.5
1,470,689	-				+0.5
1,470,695	+				-1.0
1,470,695	+				+0.2
1,470,698	+				+0.5
1,470,698	+				-0.3
1,470,698	+				+2.6
1,470,698	+				-0.7
1,470,698	+				-1.5
1,470,698	+				-0.0
1,470,698	+				+0.4
1,470,699	-				-1.5
1,470,699	-				+0.2
1,470,699	-				-1.5
1,470,714	+				+1.0
1,471,336	+				+1.4
1,471,337	-				-3.6
1,471,398	-				-0.0
1,471,566	-		LU632_RS07875	0.49	-1.5