Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cysI and LU632_RS06410 are separated by 12 nucleotides LU632_RS06410 and LU632_RS06415 are separated by 435 nucleotides
LU632_RS06405: cysI - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 1,231,332 to 1,233,047
cysI
LU632_RS06410: LU632_RS06410 - phosphoadenylyl-sulfate reductase, at 1,233,060 to 1,233,791
_RS06410
LU632_RS06415: LU632_RS06415 - hypothetical protein, at 1,234,227 to 1,234,436
_RS06415
Position (kb) 1233
1234 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1232.120 kb on + strand, within cysI at 1232.121 kb on - strand, within cysI at 1232.121 kb on - strand, within cysI at 1232.121 kb on - strand, within cysI at 1232.123 kb on + strand, within cysI at 1232.134 kb on - strand, within cysI at 1232.259 kb on + strand, within cysI at 1232.610 kb on - strand, within cysI at 1232.747 kb on + strand, within cysI at 1232.747 kb on + strand, within cysI at 1232.748 kb on - strand, within cysI at 1232.835 kb on + strand, within cysI at 1232.838 kb on - strand, within cysI at 1232.873 kb on + strand, within cysI at 1232.883 kb on - strand at 1232.921 kb on + strand at 1233.318 kb on + strand, within LU632_RS06410 at 1233.451 kb on - strand, within LU632_RS06410 at 1233.684 kb on + strand, within LU632_RS06410 at 1233.702 kb on - strand, within LU632_RS06410 at 1233.789 kb on + strand at 1233.867 kb on - strand at 1233.867 kb on - strand at 1233.867 kb on - strand at 1233.963 kb on + strand at 1234.008 kb on - strand at 1234.084 kb on + strand at 1234.084 kb on + strand at 1234.087 kb on + strand at 1234.087 kb on + strand at 1234.101 kb on + strand at 1234.105 kb on + strand at 1234.125 kb on + strand at 1234.175 kb on - strand at 1234.177 kb on - strand at 1234.177 kb on - strand at 1234.181 kb on + strand at 1234.250 kb on - strand, within LU632_RS06415 at 1234.322 kb on + strand, within LU632_RS06415 at 1234.447 kb on + strand at 1234.447 kb on + strand at 1234.447 kb on + strand at 1234.465 kb on + strand at 1234.465 kb on + strand at 1234.465 kb on + strand at 1234.466 kb on - strand at 1234.466 kb on - strand at 1234.466 kb on - strand at 1234.466 kb on - strand at 1234.512 kb on - strand at 1234.514 kb on + strand at 1234.584 kb on - strand at 1234.584 kb on - strand at 1234.723 kb on + strand at 1234.735 kb on - strand at 1234.757 kb on - strand at 1234.778 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 1,232,120 + cysI LU632_RS06405 0.46 -2.8 1,232,121 - cysI LU632_RS06405 0.46 -0.1 1,232,121 - cysI LU632_RS06405 0.46 -2.6 1,232,121 - cysI LU632_RS06405 0.46 +0.4 1,232,123 + cysI LU632_RS06405 0.46 -0.4 1,232,134 - cysI LU632_RS06405 0.47 +0.2 1,232,259 + cysI LU632_RS06405 0.54 -1.9 1,232,610 - cysI LU632_RS06405 0.74 -1.4 1,232,747 + cysI LU632_RS06405 0.82 +0.4 1,232,747 + cysI LU632_RS06405 0.82 +0.5 1,232,748 - cysI LU632_RS06405 0.83 -1.8 1,232,835 + cysI LU632_RS06405 0.88 -2.2 1,232,838 - cysI LU632_RS06405 0.88 -3.7 1,232,873 + cysI LU632_RS06405 0.90 -0.5 1,232,883 - +0.6 1,232,921 + +0.4 1,233,318 + LU632_RS06410 0.35 -2.9 1,233,451 - LU632_RS06410 0.53 -1.8 1,233,684 + LU632_RS06410 0.85 +2.1 1,233,702 - LU632_RS06410 0.88 -1.4 1,233,789 + -0.6 1,233,867 - +0.6 1,233,867 - -0.4 1,233,867 - +2.4 1,233,963 + +0.1 1,234,008 - -1.2 1,234,084 + +0.6 1,234,084 + +0.3 1,234,087 + -0.4 1,234,087 + -0.0 1,234,101 + -0.7 1,234,105 + -1.2 1,234,125 + -1.4 1,234,175 - +0.1 1,234,177 - +0.5 1,234,177 - -0.3 1,234,181 + +3.0 1,234,250 - LU632_RS06415 0.11 -1.2 1,234,322 + LU632_RS06415 0.45 -0.5 1,234,447 + +1.0 1,234,447 + +0.1 1,234,447 + +0.4 1,234,465 + +0.6 1,234,465 + -1.8 1,234,465 + +0.7 1,234,466 - -1.8 1,234,466 - +0.8 1,234,466 - -0.3 1,234,466 - -1.4 1,234,512 - -2.2 1,234,514 + -0.2 1,234,584 - +0.8 1,234,584 - +1.6 1,234,723 + +0.9 1,234,735 - +1.2 1,234,757 - +0.6 1,234,778 + -2.2
Or see this region's nucleotide sequence