Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05190 and LU632_RS05195 are separated by 142 nucleotides LU632_RS05195 and LU632_RS05200 are separated by 68 nucleotides LU632_RS05200 and LU632_RS05205 are separated by 6 nucleotides LU632_RS05205 and LU632_RS05210 are separated by 192 nucleotides LU632_RS05210 and LU632_RS05215 overlap by 1 nucleotides
LU632_RS05190: LU632_RS05190 - IS481 family transposase, at 1,005,377 to 1,006,417
_RS05190
LU632_RS05195: LU632_RS05195 - hypothetical protein, at 1,006,560 to 1,006,877
_RS05195
LU632_RS05200: LU632_RS05200 - toll/interleukin-1 receptor domain-containing protein, at 1,006,946 to 1,007,578
_RS05200
LU632_RS05205: LU632_RS05205 - hypothetical protein, at 1,007,585 to 1,007,893
_RS05205
LU632_RS05210: LU632_RS05210 - TIGR03757 family integrating conjugative element protein, at 1,008,086 to 1,008,484
_RS05210
LU632_RS05215: LU632_RS05215 - TIGR03756 family integrating conjugative element protein, at 1,008,484 to 1,009,462
_RS05215
Position (kb) 1006
1007
1008 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1006.469 kb on + strand at 1006.522 kb on - strand at 1006.598 kb on + strand, within LU632_RS05195 at 1006.667 kb on + strand, within LU632_RS05195 at 1006.667 kb on + strand, within LU632_RS05195 at 1006.667 kb on + strand, within LU632_RS05195 at 1006.668 kb on - strand, within LU632_RS05195 at 1006.668 kb on - strand, within LU632_RS05195 at 1006.673 kb on + strand, within LU632_RS05195 at 1006.697 kb on - strand, within LU632_RS05195 at 1006.763 kb on + strand, within LU632_RS05195 at 1006.764 kb on - strand, within LU632_RS05195 at 1006.822 kb on - strand, within LU632_RS05195 at 1006.928 kb on - strand at 1007.061 kb on + strand, within LU632_RS05200 at 1007.092 kb on + strand, within LU632_RS05200 at 1007.152 kb on + strand, within LU632_RS05200 at 1007.169 kb on - strand, within LU632_RS05200 at 1007.171 kb on - strand, within LU632_RS05200 at 1007.172 kb on + strand, within LU632_RS05200 at 1007.217 kb on + strand, within LU632_RS05200 at 1007.284 kb on + strand, within LU632_RS05200 at 1007.328 kb on + strand, within LU632_RS05200 at 1007.338 kb on - strand, within LU632_RS05200 at 1007.370 kb on + strand, within LU632_RS05200 at 1007.405 kb on - strand, within LU632_RS05200 at 1007.408 kb on + strand, within LU632_RS05200 at 1007.409 kb on - strand, within LU632_RS05200 at 1007.478 kb on + strand, within LU632_RS05200 at 1007.478 kb on + strand, within LU632_RS05200 at 1007.483 kb on - strand, within LU632_RS05200 at 1007.484 kb on + strand, within LU632_RS05200 at 1007.492 kb on + strand, within LU632_RS05200 at 1007.583 kb on - strand at 1007.642 kb on + strand, within LU632_RS05205 at 1007.643 kb on - strand, within LU632_RS05205 at 1007.643 kb on - strand, within LU632_RS05205 at 1007.687 kb on + strand, within LU632_RS05205 at 1007.830 kb on - strand, within LU632_RS05205 at 1007.895 kb on - strand at 1007.965 kb on + strand at 1007.965 kb on + strand at 1007.965 kb on + strand at 1008.348 kb on - strand, within LU632_RS05210 at 1008.425 kb on + strand, within LU632_RS05210 at 1008.539 kb on + strand at 1008.540 kb on - strand at 1008.543 kb on - strand at 1008.543 kb on - strand at 1008.546 kb on + strand at 1008.546 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 1,006,469 + -1.9 1,006,522 - -0.4 1,006,598 + LU632_RS05195 0.12 -1.5 1,006,667 + LU632_RS05195 0.34 +0.6 1,006,667 + LU632_RS05195 0.34 -1.0 1,006,667 + LU632_RS05195 0.34 +2.0 1,006,668 - LU632_RS05195 0.34 +2.6 1,006,668 - LU632_RS05195 0.34 +0.6 1,006,673 + LU632_RS05195 0.36 -0.5 1,006,697 - LU632_RS05195 0.43 -2.1 1,006,763 + LU632_RS05195 0.64 -1.2 1,006,764 - LU632_RS05195 0.64 -0.5 1,006,822 - LU632_RS05195 0.82 -0.4 1,006,928 - +3.1 1,007,061 + LU632_RS05200 0.18 -0.8 1,007,092 + LU632_RS05200 0.23 -3.0 1,007,152 + LU632_RS05200 0.33 +1.2 1,007,169 - LU632_RS05200 0.35 -1.5 1,007,171 - LU632_RS05200 0.36 +0.1 1,007,172 + LU632_RS05200 0.36 +0.6 1,007,217 + LU632_RS05200 0.43 +1.0 1,007,284 + LU632_RS05200 0.53 -1.0 1,007,328 + LU632_RS05200 0.60 -0.0 1,007,338 - LU632_RS05200 0.62 -2.2 1,007,370 + LU632_RS05200 0.67 -1.5 1,007,405 - LU632_RS05200 0.73 +0.5 1,007,408 + LU632_RS05200 0.73 +0.6 1,007,409 - LU632_RS05200 0.73 +1.2 1,007,478 + LU632_RS05200 0.84 +1.4 1,007,478 + LU632_RS05200 0.84 +2.2 1,007,483 - LU632_RS05200 0.85 +0.1 1,007,484 + LU632_RS05200 0.85 +1.3 1,007,492 + LU632_RS05200 0.86 -1.7 1,007,583 - +0.1 1,007,642 + LU632_RS05205 0.18 +0.4 1,007,643 - LU632_RS05205 0.19 -0.1 1,007,643 - LU632_RS05205 0.19 +1.4 1,007,687 + LU632_RS05205 0.33 +1.4 1,007,830 - LU632_RS05205 0.79 +1.0 1,007,895 - +0.2 1,007,965 + -1.0 1,007,965 + +0.3 1,007,965 + +0.0 1,008,348 - LU632_RS05210 0.66 -0.6 1,008,425 + LU632_RS05210 0.85 +1.0 1,008,539 + -1.7 1,008,540 - +0.9 1,008,543 - -0.3 1,008,543 - -2.2 1,008,546 + +1.8 1,008,546 + -2.4
Or see this region's nucleotide sequence