Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04355 and LU632_RS04360 overlap by 11 nucleotides LU632_RS04360 and LU632_RS04365 are separated by 20 nucleotides LU632_RS04365 and LU632_RS04370 are separated by 608 nucleotides LU632_RS04370 and LU632_RS04375 are separated by 140 nucleotides
LU632_RS04355: LU632_RS04355 - IS6 family transposase, at 862,576 to 862,905
_RS04355
LU632_RS04360: LU632_RS04360 - VRR-NUC domain-containing protein, at 862,895 to 863,426
_RS04360
LU632_RS04365: LU632_RS04365 - IS5/IS1182 family transposase, at 863,447 to 863,548
_RS04365
LU632_RS04370: LU632_RS04370 - hypothetical protein, at 864,157 to 864,387
_RS04370
LU632_RS04375: LU632_RS04375 - IS91 family transposase, at 864,528 to 865,751
_RS04375
Position (kb) 863
864 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 862.492 kb on + strand at 862.492 kb on + strand at 862.546 kb on + strand at 862.627 kb on - strand, within LU632_RS04355 at 862.628 kb on + strand, within LU632_RS04355 at 862.628 kb on + strand, within LU632_RS04355 at 862.628 kb on + strand, within LU632_RS04355 at 862.629 kb on - strand, within LU632_RS04355 at 862.641 kb on + strand, within LU632_RS04355 at 862.641 kb on + strand, within LU632_RS04355 at 862.641 kb on + strand, within LU632_RS04355 at 862.657 kb on + strand, within LU632_RS04355 at 862.748 kb on + strand, within LU632_RS04355 at 862.816 kb on + strand, within LU632_RS04355 at 862.843 kb on + strand, within LU632_RS04355 at 862.843 kb on + strand, within LU632_RS04355 at 862.844 kb on - strand, within LU632_RS04355 at 863.060 kb on + strand, within LU632_RS04360 at 863.077 kb on + strand, within LU632_RS04360 at 863.098 kb on + strand, within LU632_RS04360 at 863.098 kb on + strand, within LU632_RS04360 at 863.236 kb on + strand, within LU632_RS04360 at 863.236 kb on + strand, within LU632_RS04360 at 863.237 kb on - strand, within LU632_RS04360 at 863.237 kb on - strand, within LU632_RS04360 at 863.237 kb on - strand, within LU632_RS04360 at 863.288 kb on + strand, within LU632_RS04360 at 863.292 kb on + strand, within LU632_RS04360 at 863.423 kb on + strand at 863.424 kb on - strand at 863.480 kb on - strand, within LU632_RS04365 at 863.612 kb on + strand at 863.612 kb on + strand at 863.655 kb on - strand at 863.655 kb on - strand at 863.659 kb on - strand at 863.659 kb on - strand at 863.663 kb on + strand at 863.663 kb on + strand at 863.664 kb on - strand at 863.683 kb on - strand at 863.795 kb on + strand at 863.806 kb on + strand at 863.972 kb on - strand at 864.042 kb on - strand at 864.042 kb on - strand at 864.042 kb on - strand at 864.075 kb on + strand at 864.075 kb on + strand at 864.076 kb on - strand at 864.102 kb on - strand at 864.122 kb on + strand at 864.122 kb on + strand at 864.122 kb on + strand at 864.123 kb on - strand at 864.126 kb on + strand at 864.126 kb on + strand at 864.177 kb on + strand at 864.229 kb on - strand, within LU632_RS04370 at 864.252 kb on + strand, within LU632_RS04370 at 864.272 kb on + strand, within LU632_RS04370 at 864.342 kb on - strand, within LU632_RS04370 at 864.342 kb on - strand, within LU632_RS04370 at 864.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 862,492 + -2.1 862,492 + +0.5 862,546 + -1.3 862,627 - LU632_RS04355 0.15 +0.5 862,628 + LU632_RS04355 0.16 -1.9 862,628 + LU632_RS04355 0.16 +0.7 862,628 + LU632_RS04355 0.16 -1.1 862,629 - LU632_RS04355 0.16 +1.6 862,641 + LU632_RS04355 0.20 -0.0 862,641 + LU632_RS04355 0.20 -0.2 862,641 + LU632_RS04355 0.20 +0.7 862,657 + LU632_RS04355 0.25 -0.2 862,748 + LU632_RS04355 0.52 +0.7 862,816 + LU632_RS04355 0.73 -0.7 862,843 + LU632_RS04355 0.81 +0.4 862,843 + LU632_RS04355 0.81 +0.4 862,844 - LU632_RS04355 0.81 +2.1 863,060 + LU632_RS04360 0.31 -1.9 863,077 + LU632_RS04360 0.34 +0.9 863,098 + LU632_RS04360 0.38 -0.1 863,098 + LU632_RS04360 0.38 -0.7 863,236 + LU632_RS04360 0.64 +2.4 863,236 + LU632_RS04360 0.64 -0.7 863,237 - LU632_RS04360 0.64 +2.4 863,237 - LU632_RS04360 0.64 +2.3 863,237 - LU632_RS04360 0.64 +3.0 863,288 + LU632_RS04360 0.74 +0.7 863,292 + LU632_RS04360 0.75 -0.3 863,423 + +4.1 863,424 - -0.1 863,480 - LU632_RS04365 0.32 -2.7 863,612 + +0.4 863,612 + -0.5 863,655 - +0.6 863,655 - +0.1 863,659 - +0.9 863,659 - -1.3 863,663 + -0.1 863,663 + +0.0 863,664 - -0.3 863,683 - -1.8 863,795 + -1.0 863,806 + -1.8 863,972 - -1.0 864,042 - -0.9 864,042 - +1.3 864,042 - +1.3 864,075 + +0.9 864,075 + -1.3 864,076 - +0.5 864,102 - +0.7 864,122 + -1.1 864,122 + -3.4 864,122 + -0.3 864,123 - -0.0 864,126 + +1.7 864,126 + +2.4 864,177 + +2.0 864,229 - LU632_RS04370 0.31 +0.9 864,252 + LU632_RS04370 0.41 -0.2 864,272 + LU632_RS04370 0.50 +0.4 864,342 - LU632_RS04370 0.80 -0.2 864,342 - LU632_RS04370 0.80 +0.0 864,415 - -0.0
Or see this region's nucleotide sequence