Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yiaK and LU632_RS04255 are separated by 13 nucleotides LU632_RS04255 and LU632_RS04260 are separated by 14 nucleotides LU632_RS04260 and LU632_RS04265 overlap by 4 nucleotides
LU632_RS04250: yiaK - 3-dehydro-L-gulonate 2-dehydrogenase, at 845,408 to 846,406
yiaK
LU632_RS04255: LU632_RS04255 - YhcH/YjgK/YiaL family protein, at 846,420 to 846,887
_RS04255
LU632_RS04260: LU632_RS04260 - MFS transporter, at 846,902 to 848,200
_RS04260
LU632_RS04265: LU632_RS04265 - carbohydrate kinase, at 848,197 to 849,681
_RS04265
Position (kb) 846
847
848
849 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 845.923 kb on + strand, within yiaK at 846.021 kb on - strand, within yiaK at 846.097 kb on + strand, within yiaK at 846.130 kb on + strand, within yiaK at 846.434 kb on + strand at 846.489 kb on + strand, within LU632_RS04255 at 846.490 kb on - strand, within LU632_RS04255 at 846.636 kb on + strand, within LU632_RS04255 at 846.636 kb on + strand, within LU632_RS04255 at 846.821 kb on + strand, within LU632_RS04255 at 846.821 kb on + strand, within LU632_RS04255 at 846.901 kb on + strand at 846.901 kb on + strand at 846.902 kb on - strand at 846.913 kb on - strand at 846.985 kb on + strand at 846.995 kb on - strand at 847.002 kb on - strand at 847.578 kb on + strand, within LU632_RS04260 at 847.579 kb on - strand, within LU632_RS04260 at 847.646 kb on - strand, within LU632_RS04260 at 847.664 kb on + strand, within LU632_RS04260 at 847.688 kb on - strand, within LU632_RS04260 at 847.898 kb on + strand, within LU632_RS04260 at 847.898 kb on + strand, within LU632_RS04260 at 847.899 kb on - strand, within LU632_RS04260 at 847.899 kb on - strand, within LU632_RS04260 at 847.899 kb on - strand, within LU632_RS04260 at 847.914 kb on - strand, within LU632_RS04260 at 848.063 kb on + strand, within LU632_RS04260 at 848.063 kb on + strand, within LU632_RS04260 at 848.063 kb on + strand, within LU632_RS04260 at 848.063 kb on + strand, within LU632_RS04260 at 848.063 kb on + strand, within LU632_RS04260 at 848.064 kb on - strand, within LU632_RS04260 at 848.064 kb on - strand, within LU632_RS04260 at 848.065 kb on + strand, within LU632_RS04260 at 848.065 kb on + strand, within LU632_RS04260 at 848.109 kb on + strand at 848.235 kb on + strand at 848.252 kb on - strand at 848.370 kb on - strand, within LU632_RS04265 at 848.678 kb on - strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.741 kb on + strand, within LU632_RS04265 at 848.741 kb on + strand, within LU632_RS04265 at 848.743 kb on + strand, within LU632_RS04265 at 848.749 kb on - strand, within LU632_RS04265 at 848.853 kb on + strand, within LU632_RS04265 at 848.853 kb on + strand, within LU632_RS04265 at 848.854 kb on - strand, within LU632_RS04265 at 849.076 kb on + strand, within LU632_RS04265 at 849.076 kb on + strand, within LU632_RS04265 at 849.076 kb on + strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.079 kb on - strand, within LU632_RS04265 at 849.079 kb on - strand, within LU632_RS04265 at 849.162 kb on - strand, within LU632_RS04265
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 845,923 + yiaK LU632_RS04250 0.52 -4.6 846,021 - yiaK LU632_RS04250 0.61 -2.7 846,097 + yiaK LU632_RS04250 0.69 -2.9 846,130 + yiaK LU632_RS04250 0.72 -2.1 846,434 + -4.1 846,489 + LU632_RS04255 0.15 -0.9 846,490 - LU632_RS04255 0.15 -2.6 846,636 + LU632_RS04255 0.46 -1.7 846,636 + LU632_RS04255 0.46 -2.9 846,821 + LU632_RS04255 0.86 +2.2 846,821 + LU632_RS04255 0.86 -0.3 846,901 + -1.3 846,901 + -3.0 846,902 - -3.6 846,913 - -1.0 846,985 + +0.1 846,995 - -3.9 847,002 - -2.0 847,578 + LU632_RS04260 0.52 +0.1 847,579 - LU632_RS04260 0.52 +1.0 847,646 - LU632_RS04260 0.57 -1.9 847,664 + LU632_RS04260 0.59 +0.7 847,688 - LU632_RS04260 0.61 -3.9 847,898 + LU632_RS04260 0.77 -0.2 847,898 + LU632_RS04260 0.77 -3.2 847,899 - LU632_RS04260 0.77 -2.4 847,899 - LU632_RS04260 0.77 -0.3 847,899 - LU632_RS04260 0.77 -3.6 847,914 - LU632_RS04260 0.78 -4.1 848,063 + LU632_RS04260 0.89 -1.8 848,063 + LU632_RS04260 0.89 -1.2 848,063 + LU632_RS04260 0.89 -2.2 848,063 + LU632_RS04260 0.89 -3.2 848,063 + LU632_RS04260 0.89 -1.8 848,064 - LU632_RS04260 0.89 -2.1 848,064 - LU632_RS04260 0.89 -1.9 848,065 + LU632_RS04260 0.90 -2.3 848,065 + LU632_RS04260 0.90 +1.0 848,109 + -0.9 848,235 + -4.6 848,252 - +0.2 848,370 - LU632_RS04265 0.12 -0.0 848,678 - LU632_RS04265 0.32 -1.5 848,724 + LU632_RS04265 0.35 -0.3 848,724 + LU632_RS04265 0.35 -1.5 848,724 + LU632_RS04265 0.35 -2.1 848,724 + LU632_RS04265 0.35 -0.3 848,741 + LU632_RS04265 0.37 -0.3 848,741 + LU632_RS04265 0.37 -1.7 848,743 + LU632_RS04265 0.37 -2.5 848,749 - LU632_RS04265 0.37 +1.4 848,853 + LU632_RS04265 0.44 -3.3 848,853 + LU632_RS04265 0.44 +0.1 848,854 - LU632_RS04265 0.44 +0.5 849,076 + LU632_RS04265 0.59 -0.8 849,076 + LU632_RS04265 0.59 -0.9 849,076 + LU632_RS04265 0.59 -4.6 849,077 - LU632_RS04265 0.59 -2.3 849,077 - LU632_RS04265 0.59 -0.9 849,077 - LU632_RS04265 0.59 +1.7 849,077 - LU632_RS04265 0.59 -3.0 849,079 - LU632_RS04265 0.59 +1.7 849,079 - LU632_RS04265 0.59 -1.9 849,162 - LU632_RS04265 0.65 -2.0
Or see this region's nucleotide sequence