Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03200

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03195 and LU632_RS03200 are separated by 359 nucleotidesLU632_RS03200 and LU632_RS03205 are separated by 240 nucleotidesLU632_RS03205 and LU632_RS03210 are separated by 67 nucleotidesLU632_RS03210 and sctJ are separated by 5 nucleotides LU632_RS03190: LU632_RS03190 - PAS domain-containing sensor histidine kinase, at 653,120 to 654,619 _RS03190 LU632_RS03195: LU632_RS03195 - response regulator transcription factor, at 654,612 to 655,253 _RS03195 LU632_RS03200: LU632_RS03200 - sigma-54 dependent transcriptional regulator, at 655,613 to 656,590 _RS03200 LU632_RS03205: LU632_RS03205 - hypothetical protein, at 656,831 to 657,034 _RS03205 LU632_RS03210: LU632_RS03210 - EscI/YscI/HrpB family type III secretion system inner rod protein, at 657,102 to 657,467 _RS03210 LU632_RS03215: sctJ - type III secretion inner membrane ring lipoprotein SctJ, at 657,473 to 658,249 sctJ Position (kb) 655 656 657Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 654.617 kb on + strandat 654.621 kb on - strandat 654.621 kb on - strandat 654.788 kb on + strand, within LU632_RS03195at 654.789 kb on - strand, within LU632_RS03195at 654.789 kb on - strand, within LU632_RS03195at 654.789 kb on - strand, within LU632_RS03195at 654.789 kb on - strand, within LU632_RS03195at 654.824 kb on + strand, within LU632_RS03195at 654.825 kb on - strand, within LU632_RS03195at 654.870 kb on + strand, within LU632_RS03195at 654.870 kb on + strand, within LU632_RS03195at 654.870 kb on + strand, within LU632_RS03195at 654.871 kb on - strand, within LU632_RS03195at 654.927 kb on - strand, within LU632_RS03195at 655.033 kb on - strand, within LU632_RS03195at 655.033 kb on - strand, within LU632_RS03195at 655.033 kb on - strand, within LU632_RS03195at 655.121 kb on + strand, within LU632_RS03195at 655.152 kb on - strand, within LU632_RS03195at 655.214 kb on + strandat 655.225 kb on - strandat 655.225 kb on - strandat 655.231 kb on + strandat 655.258 kb on - strandat 655.264 kb on - strandat 655.271 kb on + strandat 655.272 kb on - strandat 655.344 kb on + strandat 655.442 kb on - strandat 655.442 kb on - strandat 655.485 kb on - strandat 655.527 kb on + strandat 655.550 kb on + strandat 655.613 kb on - strandat 655.700 kb on - strandat 655.700 kb on - strandat 655.701 kb on + strandat 655.701 kb on + strandat 655.701 kb on + strandat 655.701 kb on + strandat 655.701 kb on + strandat 655.701 kb on + strandat 655.702 kb on - strandat 655.702 kb on - strandat 655.702 kb on - strandat 655.702 kb on - strandat 655.702 kb on - strandat 655.911 kb on - strand, within LU632_RS03200at 655.990 kb on + strand, within LU632_RS03200at 655.991 kb on - strand, within LU632_RS03200at 656.012 kb on - strand, within LU632_RS03200at 656.012 kb on - strand, within LU632_RS03200at 656.035 kb on + strand, within LU632_RS03200at 656.153 kb on + strand, within LU632_RS03200at 656.153 kb on + strand, within LU632_RS03200at 656.153 kb on + strand, within LU632_RS03200at 656.165 kb on - strand, within LU632_RS03200at 656.165 kb on - strand, within LU632_RS03200at 656.215 kb on + strand, within LU632_RS03200at 656.215 kb on + strand, within LU632_RS03200at 656.216 kb on - strand, within LU632_RS03200at 656.230 kb on + strand, within LU632_RS03200at 656.314 kb on + strand, within LU632_RS03200at 656.314 kb on + strand, within LU632_RS03200at 656.559 kb on + strandat 656.559 kb on + strandat 656.560 kb on - strandat 656.578 kb on + strandat 656.578 kb on + strandat 656.578 kb on + strandat 656.579 kb on - strandat 656.579 kb on - strandat 656.671 kb on + strandat 656.672 kb on - strandat 656.672 kb on - strandat 656.767 kb on + strandat 656.767 kb on + strandat 656.767 kb on + strandat 656.768 kb on - strandat 656.770 kb on + strandat 656.772 kb on + strandat 656.805 kb on + strandat 656.862 kb on + strand, within LU632_RS03205at 656.950 kb on + strand, within LU632_RS03205at 656.951 kb on - strand, within LU632_RS03205at 656.961 kb on + strand, within LU632_RS03205at 656.962 kb on - strand, within LU632_RS03205at 656.962 kb on - strand, within LU632_RS03205at 656.962 kb on - strand, within LU632_RS03205at 656.962 kb on - strand, within LU632_RS03205at 657.017 kb on - strandat 657.152 kb on + strand, within LU632_RS03210at 657.211 kb on + strand, within LU632_RS03210at 657.269 kb on + strand, within LU632_RS03210at 657.478 kb on + strandat 657.479 kb on - strandat 657.504 kb on + strandat 657.504 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
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654,617 + +4.3
654,621 - +0.8
654,621 - -0.2
654,788 + LU632_RS03195 0.27 +2.2
654,789 - LU632_RS03195 0.28 +1.3
654,789 - LU632_RS03195 0.28 +0.8
654,789 - LU632_RS03195 0.28 +2.0
654,789 - LU632_RS03195 0.28 +2.0
654,824 + LU632_RS03195 0.33 +3.1
654,825 - LU632_RS03195 0.33 +2.4
654,870 + LU632_RS03195 0.40 +3.1
654,870 + LU632_RS03195 0.40 -2.0
654,870 + LU632_RS03195 0.40 -0.2
654,871 - LU632_RS03195 0.40 +0.2
654,927 - LU632_RS03195 0.49 +3.2
655,033 - LU632_RS03195 0.66 +4.8
655,033 - LU632_RS03195 0.66 +2.4
655,033 - LU632_RS03195 0.66 +2.4
655,121 + LU632_RS03195 0.79 +5.3
655,152 - LU632_RS03195 0.84 -0.0
655,214 + +0.0
655,225 - +1.0
655,225 - +3.5
655,231 + +1.4
655,258 - -2.4
655,264 - +1.8
655,271 + +1.0
655,272 - +2.2
655,344 + +1.5
655,442 - +3.1
655,442 - +1.3
655,485 - +2.5
655,527 + -1.1
655,550 + +1.8
655,613 - +1.5
655,700 - +4.5
655,700 - +2.0
655,701 + +0.2
655,701 + +2.5
655,701 + +3.8
655,701 + +3.2
655,701 + +2.0
655,701 + +2.3
655,702 - +1.7
655,702 - -3.2
655,702 - +2.5
655,702 - -3.0
655,702 - +1.9
655,911 - LU632_RS03200 0.30 +1.1
655,990 + LU632_RS03200 0.39 +1.5
655,991 - LU632_RS03200 0.39 +1.2
656,012 - LU632_RS03200 0.41 -0.7
656,012 - LU632_RS03200 0.41 +0.2
656,035 + LU632_RS03200 0.43 -0.1
656,153 + LU632_RS03200 0.55 +2.4
656,153 + LU632_RS03200 0.55 +3.2
656,153 + LU632_RS03200 0.55 +1.3
656,165 - LU632_RS03200 0.56 +2.4
656,165 - LU632_RS03200 0.56 +0.5
656,215 + LU632_RS03200 0.62 -0.2
656,215 + LU632_RS03200 0.62 +3.3
656,216 - LU632_RS03200 0.62 +1.8
656,230 + LU632_RS03200 0.63 -0.2
656,314 + LU632_RS03200 0.72 +0.8
656,314 + LU632_RS03200 0.72 +2.1
656,559 + -0.5
656,559 + +2.5
656,560 - -2.2
656,578 + +0.7
656,578 + +0.8
656,578 + +0.4
656,579 - +1.8
656,579 - +2.1
656,671 + +0.3
656,672 - -3.4
656,672 - +1.9
656,767 + -1.8
656,767 + +0.4
656,767 + +0.3
656,768 - -2.2
656,770 + +0.0
656,772 + -2.4
656,805 + +0.5
656,862 + LU632_RS03205 0.15 -0.6
656,950 + LU632_RS03205 0.58 -1.5
656,951 - LU632_RS03205 0.59 -0.2
656,961 + LU632_RS03205 0.64 +1.1
656,962 - LU632_RS03205 0.64 -1.2
656,962 - LU632_RS03205 0.64 +0.8
656,962 - LU632_RS03205 0.64 -1.9
656,962 - LU632_RS03205 0.64 -2.0
657,017 - -2.9
657,152 + LU632_RS03210 0.14 -0.2
657,211 + LU632_RS03210 0.30 -2.4
657,269 + LU632_RS03210 0.46 +0.4
657,478 + +1.1
657,479 - -0.2
657,504 + -0.2
657,504 + +1.2

Or see this region's nucleotide sequence