Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ampE and LU632_RS03055 are separated by 54 nucleotides LU632_RS03055 and LU632_RS03060 are separated by 630 nucleotides LU632_RS03060 and LU632_RS03065 overlap by 4 nucleotides LU632_RS03065 and aroP are separated by 352 nucleotides
LU632_RS03050: ampE - beta-lactamase regulator AmpE, at 622,737 to 623,545
ampE
LU632_RS03055: LU632_RS03055 - hypothetical protein, at 623,600 to 623,866
_RS03055
LU632_RS03060: LU632_RS03060 - IS1 family transposase, at 624,497 to 625,000
_RS03060
LU632_RS03065: LU632_RS03065 - hypothetical protein, at 624,997 to 625,014
_RS03065
LU632_RS03070: aroP - aromatic amino acid transporter AroP, at 625,367 to 626,722
aroP
Position (kb) 624
625
626 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 623.527 kb on - strand at 623.528 kb on + strand at 623.529 kb on - strand at 623.529 kb on - strand at 623.552 kb on - strand at 623.552 kb on - strand at 623.552 kb on - strand at 623.554 kb on + strand at 623.555 kb on - strand at 623.602 kb on - strand at 623.602 kb on - strand at 623.676 kb on + strand, within LU632_RS03055 at 623.676 kb on + strand, within LU632_RS03055 at 623.696 kb on + strand, within LU632_RS03055 at 623.697 kb on - strand, within LU632_RS03055 at 623.698 kb on + strand, within LU632_RS03055 at 623.720 kb on + strand, within LU632_RS03055 at 623.726 kb on - strand, within LU632_RS03055 at 623.773 kb on - strand, within LU632_RS03055 at 623.978 kb on - strand at 624.505 kb on - strand at 625.258 kb on + strand at 625.258 kb on + strand at 625.258 kb on + strand at 625.259 kb on - strand at 625.261 kb on - strand at 625.323 kb on + strand at 625.323 kb on + strand at 625.323 kb on + strand at 625.323 kb on + strand at 625.324 kb on - strand at 625.324 kb on - strand at 625.324 kb on - strand at 625.324 kb on - strand at 625.324 kb on - strand at 625.414 kb on + strand at 625.414 kb on + strand at 625.471 kb on + strand at 625.471 kb on + strand at 625.476 kb on - strand at 625.484 kb on - strand at 625.484 kb on - strand at 625.551 kb on - strand, within aroP at 625.612 kb on + strand, within aroP at 625.674 kb on + strand, within aroP at 625.674 kb on + strand, within aroP at 625.678 kb on + strand, within aroP at 625.678 kb on + strand, within aroP at 625.679 kb on - strand, within aroP at 625.679 kb on - strand, within aroP at 625.679 kb on - strand, within aroP at 625.811 kb on - strand, within aroP at 625.828 kb on + strand, within aroP at 625.828 kb on + strand, within aroP at 625.950 kb on + strand, within aroP at 625.983 kb on + strand, within aroP at 625.984 kb on - strand, within aroP
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 623,527 - -2.4 623,528 + +1.2 623,529 - -2.4 623,529 - -2.2 623,552 - -0.2 623,552 - +0.3 623,552 - +0.5 623,554 + +2.1 623,555 - +0.2 623,602 - -0.5 623,602 - -0.3 623,676 + LU632_RS03055 0.28 -0.8 623,676 + LU632_RS03055 0.28 -0.7 623,696 + LU632_RS03055 0.36 +2.1 623,697 - LU632_RS03055 0.36 +1.3 623,698 + LU632_RS03055 0.37 -0.5 623,720 + LU632_RS03055 0.45 +1.6 623,726 - LU632_RS03055 0.47 +0.1 623,773 - LU632_RS03055 0.65 +0.6 623,978 - -1.0 624,505 - +1.0 625,258 + +3.1 625,258 + +1.6 625,258 + -0.2 625,259 - -1.4 625,261 - -1.2 625,323 + -0.3 625,323 + -2.2 625,323 + +0.2 625,323 + +1.2 625,324 - +1.0 625,324 - +0.8 625,324 - -0.8 625,324 - +0.2 625,324 - -0.7 625,414 + +0.7 625,414 + -0.4 625,471 + -0.4 625,471 + -0.6 625,476 - +2.6 625,484 - -0.9 625,484 - -1.2 625,551 - aroP LU632_RS03070 0.14 +0.7 625,612 + aroP LU632_RS03070 0.18 -0.8 625,674 + aroP LU632_RS03070 0.23 +0.3 625,674 + aroP LU632_RS03070 0.23 -2.4 625,678 + aroP LU632_RS03070 0.23 -0.0 625,678 + aroP LU632_RS03070 0.23 -1.4 625,679 - aroP LU632_RS03070 0.23 +0.0 625,679 - aroP LU632_RS03070 0.23 -0.8 625,679 - aroP LU632_RS03070 0.23 +1.1 625,811 - aroP LU632_RS03070 0.33 +0.8 625,828 + aroP LU632_RS03070 0.34 -1.2 625,828 + aroP LU632_RS03070 0.34 +0.2 625,950 + aroP LU632_RS03070 0.43 +0.2 625,983 + aroP LU632_RS03070 0.45 +0.6 625,984 - aroP LU632_RS03070 0.46 -1.6
Or see this region's nucleotide sequence