Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02820 and thiQ are separated by 232 nucleotides thiQ and thiP overlap by 17 nucleotides thiP and thiB overlap by 25 nucleotides
LU632_RS02820: LU632_RS02820 - DedA family protein, at 573,647 to 574,414
_RS02820
LU632_RS02825: thiQ - thiamine ABC transporter ATP-binding protein ThiQ, at 574,647 to 575,348
thiQ
LU632_RS02830: thiP - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 575,332 to 576,942
thiP
LU632_RS02835: thiB - thiamine ABC transporter substrate binding subunit, at 576,918 to 577,904
thiB
Position (kb) 575
576
577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 574.343 kb on - strand at 574.386 kb on + strand at 574.386 kb on + strand at 574.386 kb on + strand at 574.412 kb on + strand at 574.489 kb on - strand at 574.493 kb on - strand at 574.494 kb on - strand at 574.649 kb on - strand at 574.748 kb on + strand, within thiQ at 574.748 kb on + strand, within thiQ at 574.748 kb on + strand, within thiQ at 574.791 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.809 kb on - strand, within thiQ at 574.809 kb on - strand, within thiQ at 574.824 kb on + strand, within thiQ at 574.824 kb on + strand, within thiQ at 574.825 kb on - strand, within thiQ at 574.825 kb on - strand, within thiQ at 575.013 kb on - strand, within thiQ at 575.091 kb on + strand, within thiQ at 575.283 kb on + strand at 575.284 kb on - strand at 575.284 kb on - strand at 575.317 kb on + strand at 575.333 kb on + strand at 575.343 kb on + strand at 575.639 kb on + strand, within thiP at 575.657 kb on + strand, within thiP at 575.658 kb on - strand, within thiP at 575.716 kb on + strand, within thiP at 575.716 kb on + strand, within thiP at 575.717 kb on - strand, within thiP at 575.717 kb on - strand, within thiP at 575.947 kb on + strand, within thiP at 575.947 kb on + strand, within thiP at 575.977 kb on + strand, within thiP at 575.980 kb on + strand, within thiP at 575.981 kb on - strand, within thiP at 576.088 kb on + strand, within thiP at 576.466 kb on + strand, within thiP at 576.467 kb on - strand, within thiP at 576.502 kb on + strand, within thiP at 576.503 kb on - strand, within thiP at 576.548 kb on + strand, within thiP at 576.549 kb on - strand, within thiP at 576.892 kb on + strand at 576.892 kb on + strand at 576.892 kb on + strand at 576.893 kb on - strand at 576.893 kb on - strand at 576.915 kb on + strand at 576.916 kb on - strand at 576.919 kb on + strand at 577.057 kb on + strand, within thiB at 577.058 kb on - strand, within thiB at 577.176 kb on + strand, within thiB at 577.177 kb on - strand, within thiB at 577.177 kb on - strand, within thiB at 577.201 kb on - strand, within thiB at 577.241 kb on - strand, within thiB at 577.256 kb on + strand, within thiB at 577.256 kb on + strand, within thiB at 577.256 kb on + strand, within thiB at 577.257 kb on - strand, within thiB at 577.258 kb on + strand, within thiB at 577.258 kb on + strand, within thiB at 577.258 kb on + strand, within thiB at 577.258 kb on + strand, within thiB at 577.259 kb on - strand, within thiB at 577.300 kb on + strand, within thiB at 577.511 kb on + strand, within thiB at 577.511 kb on + strand, within thiB at 577.511 kb on + strand, within thiB at 577.516 kb on + strand, within thiB at 577.516 kb on + strand, within thiB at 577.516 kb on + strand, within thiB at 577.517 kb on - strand, within thiB at 577.537 kb on + strand, within thiB at 577.741 kb on + strand, within thiB at 577.741 kb on + strand, within thiB at 577.822 kb on + strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.829 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 574,343 - -1.3 574,386 + -0.2 574,386 + -2.2 574,386 + -2.9 574,412 + +0.5 574,489 - +1.3 574,493 - -0.3 574,494 - -0.4 574,649 - +0.2 574,748 + thiQ LU632_RS02825 0.14 -1.3 574,748 + thiQ LU632_RS02825 0.14 +0.1 574,748 + thiQ LU632_RS02825 0.14 +0.6 574,791 + thiQ LU632_RS02825 0.21 -2.5 574,808 + thiQ LU632_RS02825 0.23 +1.4 574,808 + thiQ LU632_RS02825 0.23 +0.3 574,808 + thiQ LU632_RS02825 0.23 -0.3 574,809 - thiQ LU632_RS02825 0.23 -1.1 574,809 - thiQ LU632_RS02825 0.23 -2.0 574,824 + thiQ LU632_RS02825 0.25 -0.8 574,824 + thiQ LU632_RS02825 0.25 -2.9 574,825 - thiQ LU632_RS02825 0.25 -0.3 574,825 - thiQ LU632_RS02825 0.25 -0.3 575,013 - thiQ LU632_RS02825 0.52 +0.4 575,091 + thiQ LU632_RS02825 0.63 -0.7 575,283 + -1.7 575,284 - -0.2 575,284 - -0.8 575,317 + +1.4 575,333 + -0.2 575,343 + -0.2 575,639 + thiP LU632_RS02830 0.19 -1.2 575,657 + thiP LU632_RS02830 0.20 -0.9 575,658 - thiP LU632_RS02830 0.20 -0.2 575,716 + thiP LU632_RS02830 0.24 -1.2 575,716 + thiP LU632_RS02830 0.24 -2.3 575,717 - thiP LU632_RS02830 0.24 -0.7 575,717 - thiP LU632_RS02830 0.24 +0.0 575,947 + thiP LU632_RS02830 0.38 -1.0 575,947 + thiP LU632_RS02830 0.38 +0.5 575,977 + thiP LU632_RS02830 0.40 +1.4 575,980 + thiP LU632_RS02830 0.40 -1.3 575,981 - thiP LU632_RS02830 0.40 +0.3 576,088 + thiP LU632_RS02830 0.47 +1.0 576,466 + thiP LU632_RS02830 0.70 -1.3 576,467 - thiP LU632_RS02830 0.70 -1.2 576,502 + thiP LU632_RS02830 0.73 +0.8 576,503 - thiP LU632_RS02830 0.73 +0.2 576,548 + thiP LU632_RS02830 0.75 -0.4 576,549 - thiP LU632_RS02830 0.76 -1.1 576,892 + +2.0 576,892 + -1.2 576,892 + +2.2 576,893 - -1.6 576,893 - +0.2 576,915 + -0.6 576,916 - +0.2 576,919 + -1.2 577,057 + thiB LU632_RS02835 0.14 -1.2 577,058 - thiB LU632_RS02835 0.14 -3.3 577,176 + thiB LU632_RS02835 0.26 -2.2 577,177 - thiB LU632_RS02835 0.26 -1.1 577,177 - thiB LU632_RS02835 0.26 -0.5 577,201 - thiB LU632_RS02835 0.29 -1.5 577,241 - thiB LU632_RS02835 0.33 -0.2 577,256 + thiB LU632_RS02835 0.34 +0.9 577,256 + thiB LU632_RS02835 0.34 -0.9 577,256 + thiB LU632_RS02835 0.34 -0.3 577,257 - thiB LU632_RS02835 0.34 -1.5 577,258 + thiB LU632_RS02835 0.34 +0.3 577,258 + thiB LU632_RS02835 0.34 +0.8 577,258 + thiB LU632_RS02835 0.34 +2.2 577,258 + thiB LU632_RS02835 0.34 -1.1 577,259 - thiB LU632_RS02835 0.35 -1.4 577,300 + thiB LU632_RS02835 0.39 -2.7 577,511 + thiB LU632_RS02835 0.60 +0.0 577,511 + thiB LU632_RS02835 0.60 +0.5 577,511 + thiB LU632_RS02835 0.60 -1.3 577,516 + thiB LU632_RS02835 0.61 -0.3 577,516 + thiB LU632_RS02835 0.61 +0.4 577,516 + thiB LU632_RS02835 0.61 +0.2 577,517 - thiB LU632_RS02835 0.61 -1.6 577,537 + thiB LU632_RS02835 0.63 -1.1 577,741 + thiB LU632_RS02835 0.83 +2.2 577,741 + thiB LU632_RS02835 0.83 +0.8 577,822 + +0.2 577,823 - -0.5 577,823 - +1.8 577,823 - +1.3 577,823 - -0.5 577,823 - -0.2 577,829 - -0.2
Or see this region's nucleotide sequence