Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cysQ and LU632_RS02090 are separated by 41 nucleotides LU632_RS02090 and LU632_RS02095 are separated by 303 nucleotides LU632_RS02095 and LU632_RS02100 are separated by 121 nucleotides
LU632_RS02085: cysQ - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 409,878 to 410,618
cysQ
LU632_RS02090: LU632_RS02090 - YtfJ family protein, at 410,660 to 411,242
_RS02090
LU632_RS02095: LU632_RS02095 - DUF1107 domain-containing protein, at 411,546 to 411,752
_RS02095
LU632_RS02100: LU632_RS02100 - hemolysin family protein, at 411,874 to 413,205
_RS02100
Position (kb) 410
411
412 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 409.704 kb on - strand at 409.833 kb on + strand at 409.833 kb on + strand at 409.834 kb on - strand at 409.834 kb on - strand at 409.838 kb on - strand at 409.838 kb on - strand at 409.860 kb on + strand at 409.860 kb on + strand at 409.861 kb on - strand at 409.861 kb on - strand at 409.933 kb on + strand at 409.933 kb on + strand at 409.934 kb on - strand at 409.935 kb on + strand at 409.935 kb on + strand at 409.936 kb on - strand at 410.244 kb on - strand, within cysQ at 410.477 kb on + strand, within cysQ at 410.477 kb on + strand, within cysQ at 410.566 kb on - strand at 410.566 kb on - strand at 410.566 kb on - strand at 410.791 kb on + strand, within LU632_RS02090 at 410.855 kb on - strand, within LU632_RS02090 at 410.897 kb on - strand, within LU632_RS02090 at 411.002 kb on + strand, within LU632_RS02090 at 411.043 kb on + strand, within LU632_RS02090 at 411.124 kb on - strand, within LU632_RS02090 at 411.168 kb on + strand, within LU632_RS02090 at 411.171 kb on - strand, within LU632_RS02090 at 411.263 kb on + strand at 411.330 kb on - strand at 411.330 kb on - strand at 411.339 kb on + strand at 411.370 kb on + strand at 411.382 kb on + strand at 411.383 kb on - strand at 411.468 kb on + strand at 411.468 kb on + strand at 411.584 kb on + strand, within LU632_RS02095 at 411.631 kb on + strand, within LU632_RS02095 at 411.632 kb on - strand, within LU632_RS02095 at 411.693 kb on + strand, within LU632_RS02095 at 411.694 kb on - strand, within LU632_RS02095 at 411.776 kb on - strand at 411.805 kb on + strand at 411.805 kb on + strand at 411.818 kb on - strand at 411.846 kb on - strand at 411.848 kb on + strand at 411.849 kb on - strand at 411.872 kb on - strand at 411.872 kb on - strand at 411.904 kb on - strand at 411.962 kb on + strand at 411.963 kb on - strand at 411.980 kb on - strand at 412.033 kb on - strand, within LU632_RS02100 at 412.033 kb on - strand, within LU632_RS02100 at 412.036 kb on + strand, within LU632_RS02100 at 412.036 kb on + strand, within LU632_RS02100 at 412.041 kb on + strand, within LU632_RS02100 at 412.042 kb on - strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.044 kb on - strand, within LU632_RS02100 at 412.044 kb on - strand, within LU632_RS02100 at 412.044 kb on - strand, within LU632_RS02100 at 412.044 kb on - strand, within LU632_RS02100 at 412.044 kb on - strand, within LU632_RS02100 at 412.070 kb on + strand, within LU632_RS02100 at 412.070 kb on + strand, within LU632_RS02100 at 412.070 kb on + strand, within LU632_RS02100 at 412.115 kb on - strand, within LU632_RS02100 at 412.241 kb on - strand, within LU632_RS02100
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 409,704 - -2.0 409,833 + +0.6 409,833 + +0.1 409,834 - +0.3 409,834 - -0.2 409,838 - +0.2 409,838 - -1.5 409,860 + +0.8 409,860 + -0.5 409,861 - -1.5 409,861 - +1.9 409,933 + -3.2 409,933 + +0.1 409,934 - -2.0 409,935 + -1.2 409,935 + -0.2 409,936 - +0.2 410,244 - cysQ LU632_RS02085 0.49 -3.8 410,477 + cysQ LU632_RS02085 0.81 +0.8 410,477 + cysQ LU632_RS02085 0.81 -1.8 410,566 - +0.8 410,566 - +0.2 410,566 - -2.2 410,791 + LU632_RS02090 0.22 -0.2 410,855 - LU632_RS02090 0.33 -2.9 410,897 - LU632_RS02090 0.41 -2.8 411,002 + LU632_RS02090 0.59 +1.2 411,043 + LU632_RS02090 0.66 +0.8 411,124 - LU632_RS02090 0.80 +0.3 411,168 + LU632_RS02090 0.87 +0.5 411,171 - LU632_RS02090 0.88 -1.5 411,263 + +0.8 411,330 - +0.6 411,330 - -1.1 411,339 + +3.2 411,370 + +0.3 411,382 + -0.8 411,383 - -0.2 411,468 + -2.2 411,468 + -1.2 411,584 + LU632_RS02095 0.18 +0.0 411,631 + LU632_RS02095 0.41 -1.1 411,632 - LU632_RS02095 0.42 +0.9 411,693 + LU632_RS02095 0.71 +0.3 411,694 - LU632_RS02095 0.71 +2.1 411,776 - +2.3 411,805 + -3.4 411,805 + +1.2 411,818 - +0.5 411,846 - -1.1 411,848 + +0.4 411,849 - -1.8 411,872 - +1.7 411,872 - -2.0 411,904 - +1.0 411,962 + -3.0 411,963 - -2.9 411,980 - -0.8 412,033 - LU632_RS02100 0.12 -4.2 412,033 - LU632_RS02100 0.12 +0.8 412,036 + LU632_RS02100 0.12 -2.6 412,036 + LU632_RS02100 0.12 -2.6 412,041 + LU632_RS02100 0.13 -3.4 412,042 - LU632_RS02100 0.13 -0.8 412,043 + LU632_RS02100 0.13 -3.6 412,043 + LU632_RS02100 0.13 -4.6 412,043 + LU632_RS02100 0.13 -2.5 412,043 + LU632_RS02100 0.13 -3.6 412,043 + LU632_RS02100 0.13 -3.8 412,043 + LU632_RS02100 0.13 -4.8 412,043 + LU632_RS02100 0.13 -3.8 412,043 + LU632_RS02100 0.13 -3.1 412,043 + LU632_RS02100 0.13 -0.8 412,043 + LU632_RS02100 0.13 -2.0 412,043 + LU632_RS02100 0.13 -3.6 412,043 + LU632_RS02100 0.13 -2.5 412,043 + LU632_RS02100 0.13 -1.2 412,044 - LU632_RS02100 0.13 -3.1 412,044 - LU632_RS02100 0.13 -2.2 412,044 - LU632_RS02100 0.13 -4.0 412,044 - LU632_RS02100 0.13 -2.9 412,044 - LU632_RS02100 0.13 -3.5 412,070 + LU632_RS02100 0.15 -2.6 412,070 + LU632_RS02100 0.15 -3.2 412,070 + LU632_RS02100 0.15 -6.4 412,115 - LU632_RS02100 0.18 -3.4 412,241 - LU632_RS02100 0.28 -1.2
Or see this region's nucleotide sequence