Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mtnC and LU632_RS01110 overlap by 29 nucleotides LU632_RS01110 and mtnA are separated by 256 nucleotides mtnA and mtnK are separated by 151 nucleotides
LU632_RS01105: mtnC - acireductone synthase, at 236,523 to 236,964
mtnC
LU632_RS01110: LU632_RS01110 - acireductone dioxygenase, at 236,936 to 237,407
_RS01110
LU632_RS01115: mtnA - S-methyl-5-thioribose-1-phosphate isomerase, at 237,664 to 238,695
mtnA
LU632_RS01120: mtnK - S-methyl-5-thioribose kinase, at 238,847 to 240,032
mtnK
Position (kb) 237
238
239 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 236.675 kb on + strand, within mtnC at 236.680 kb on - strand, within mtnC at 236.699 kb on + strand, within mtnC at 236.699 kb on + strand, within mtnC at 236.700 kb on - strand, within mtnC at 236.700 kb on - strand, within mtnC at 236.700 kb on - strand, within mtnC at 236.802 kb on + strand, within mtnC at 236.803 kb on - strand, within mtnC at 236.804 kb on + strand, within mtnC at 236.804 kb on + strand, within mtnC at 236.804 kb on + strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.844 kb on + strand, within mtnC at 236.845 kb on - strand, within mtnC at 236.849 kb on + strand, within mtnC at 236.849 kb on + strand, within mtnC at 236.850 kb on - strand, within mtnC at 237.298 kb on + strand, within LU632_RS01110 at 237.298 kb on + strand, within LU632_RS01110 at 237.298 kb on + strand, within LU632_RS01110 at 237.298 kb on + strand, within LU632_RS01110 at 237.298 kb on + strand, within LU632_RS01110 at 237.299 kb on - strand, within LU632_RS01110 at 237.302 kb on + strand, within LU632_RS01110 at 237.302 kb on + strand, within LU632_RS01110 at 237.303 kb on - strand, within LU632_RS01110 at 237.309 kb on + strand, within LU632_RS01110 at 237.309 kb on + strand, within LU632_RS01110 at 237.467 kb on - strand at 237.526 kb on + strand at 237.526 kb on + strand at 237.526 kb on + strand at 237.526 kb on + strand at 237.526 kb on + strand at 237.527 kb on - strand at 237.527 kb on - strand at 237.527 kb on - strand at 237.527 kb on - strand at 237.613 kb on - strand at 237.874 kb on - strand, within mtnA at 237.906 kb on + strand, within mtnA at 237.907 kb on - strand, within mtnA at 237.907 kb on - strand, within mtnA at 237.926 kb on + strand, within mtnA at 237.968 kb on + strand, within mtnA at 237.969 kb on - strand, within mtnA at 237.969 kb on - strand, within mtnA at 238.096 kb on - strand, within mtnA at 238.260 kb on + strand, within mtnA at 238.261 kb on - strand, within mtnA at 238.261 kb on - strand, within mtnA at 238.265 kb on - strand, within mtnA at 238.265 kb on - strand, within mtnA at 238.309 kb on - strand, within mtnA at 238.327 kb on - strand, within mtnA at 238.327 kb on - strand, within mtnA at 238.327 kb on - strand, within mtnA at 238.346 kb on - strand, within mtnA at 238.346 kb on - strand, within mtnA at 238.346 kb on - strand, within mtnA at 238.453 kb on + strand, within mtnA at 238.513 kb on + strand, within mtnA at 238.514 kb on - strand, within mtnA at 238.566 kb on + strand, within mtnA at 238.648 kb on + strand at 238.649 kb on - strand at 238.670 kb on - strand at 238.681 kb on - strand at 238.685 kb on - strand at 238.729 kb on - strand at 238.754 kb on + strand at 238.754 kb on + strand at 238.774 kb on - strand at 238.846 kb on - strand at 238.856 kb on + strand at 238.861 kb on + strand at 238.861 kb on + strand at 238.862 kb on - strand at 238.889 kb on + strand at 238.889 kb on + strand at 238.889 kb on + strand at 238.890 kb on - strand at 238.890 kb on - strand at 238.890 kb on - strand at 239.114 kb on + strand, within mtnK at 239.114 kb on + strand, within mtnK at 239.115 kb on - strand, within mtnK at 239.115 kb on - strand, within mtnK at 239.155 kb on + strand, within mtnK at 239.247 kb on + strand, within mtnK at 239.269 kb on - strand, within mtnK at 239.269 kb on - strand, within mtnK at 239.284 kb on - strand, within mtnK at 239.393 kb on + strand, within mtnK at 239.586 kb on + strand, within mtnK at 239.587 kb on - strand, within mtnK at 239.640 kb on + strand, within mtnK at 239.640 kb on + strand, within mtnK at 239.640 kb on + strand, within mtnK
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 236,675 + mtnC LU632_RS01105 0.34 -0.7 236,680 - mtnC LU632_RS01105 0.36 +2.0 236,699 + mtnC LU632_RS01105 0.40 +0.8 236,699 + mtnC LU632_RS01105 0.40 -1.8 236,700 - mtnC LU632_RS01105 0.40 -0.8 236,700 - mtnC LU632_RS01105 0.40 +0.2 236,700 - mtnC LU632_RS01105 0.40 -2.3 236,802 + mtnC LU632_RS01105 0.63 +0.2 236,803 - mtnC LU632_RS01105 0.63 +0.8 236,804 + mtnC LU632_RS01105 0.64 +2.2 236,804 + mtnC LU632_RS01105 0.64 +3.2 236,804 + mtnC LU632_RS01105 0.64 +0.8 236,805 - mtnC LU632_RS01105 0.64 -0.2 236,805 - mtnC LU632_RS01105 0.64 +0.1 236,805 - mtnC LU632_RS01105 0.64 +1.2 236,805 - mtnC LU632_RS01105 0.64 +0.6 236,844 + mtnC LU632_RS01105 0.73 -2.0 236,845 - mtnC LU632_RS01105 0.73 -2.2 236,849 + mtnC LU632_RS01105 0.74 -0.8 236,849 + mtnC LU632_RS01105 0.74 +0.8 236,850 - mtnC LU632_RS01105 0.74 -3.3 237,298 + LU632_RS01110 0.77 +0.2 237,298 + LU632_RS01110 0.77 -2.3 237,298 + LU632_RS01110 0.77 -1.0 237,298 + LU632_RS01110 0.77 -0.2 237,298 + LU632_RS01110 0.77 -0.8 237,299 - LU632_RS01110 0.77 +0.2 237,302 + LU632_RS01110 0.78 +0.9 237,302 + LU632_RS01110 0.78 -0.2 237,303 - LU632_RS01110 0.78 +1.8 237,309 + LU632_RS01110 0.79 +1.3 237,309 + LU632_RS01110 0.79 -0.7 237,467 - -0.8 237,526 + +1.3 237,526 + -0.5 237,526 + -1.7 237,526 + +1.0 237,526 + -1.3 237,527 - +2.4 237,527 - +0.4 237,527 - +1.0 237,527 - -0.1 237,613 - -0.8 237,874 - mtnA LU632_RS01115 0.20 +0.3 237,906 + mtnA LU632_RS01115 0.23 +0.8 237,907 - mtnA LU632_RS01115 0.24 -0.7 237,907 - mtnA LU632_RS01115 0.24 +0.3 237,926 + mtnA LU632_RS01115 0.25 -0.8 237,968 + mtnA LU632_RS01115 0.29 -0.1 237,969 - mtnA LU632_RS01115 0.30 +1.4 237,969 - mtnA LU632_RS01115 0.30 -0.2 238,096 - mtnA LU632_RS01115 0.42 +0.3 238,260 + mtnA LU632_RS01115 0.58 +2.1 238,261 - mtnA LU632_RS01115 0.58 -1.0 238,261 - mtnA LU632_RS01115 0.58 +0.7 238,265 - mtnA LU632_RS01115 0.58 +2.4 238,265 - mtnA LU632_RS01115 0.58 +0.8 238,309 - mtnA LU632_RS01115 0.62 -2.3 238,327 - mtnA LU632_RS01115 0.64 -1.8 238,327 - mtnA LU632_RS01115 0.64 +0.3 238,327 - mtnA LU632_RS01115 0.64 -1.2 238,346 - mtnA LU632_RS01115 0.66 +0.5 238,346 - mtnA LU632_RS01115 0.66 -0.1 238,346 - mtnA LU632_RS01115 0.66 -0.2 238,453 + mtnA LU632_RS01115 0.76 -0.6 238,513 + mtnA LU632_RS01115 0.82 -0.4 238,514 - mtnA LU632_RS01115 0.82 +0.6 238,566 + mtnA LU632_RS01115 0.87 -2.8 238,648 + +0.4 238,649 - -1.2 238,670 - -2.4 238,681 - +0.4 238,685 - -1.8 238,729 - -0.4 238,754 + +1.7 238,754 + +1.0 238,774 - +1.3 238,846 - +0.6 238,856 + -0.2 238,861 + +0.6 238,861 + +1.8 238,862 - -0.6 238,889 + +3.8 238,889 + -3.3 238,889 + -0.7 238,890 - +1.8 238,890 - +0.4 238,890 - -0.3 239,114 + mtnK LU632_RS01120 0.23 +0.3 239,114 + mtnK LU632_RS01120 0.23 +2.5 239,115 - mtnK LU632_RS01120 0.23 +2.0 239,115 - mtnK LU632_RS01120 0.23 +1.1 239,155 + mtnK LU632_RS01120 0.26 +3.1 239,247 + mtnK LU632_RS01120 0.34 -1.5 239,269 - mtnK LU632_RS01120 0.36 +1.4 239,269 - mtnK LU632_RS01120 0.36 +0.7 239,284 - mtnK LU632_RS01120 0.37 +0.5 239,393 + mtnK LU632_RS01120 0.46 -0.8 239,586 + mtnK LU632_RS01120 0.62 +0.6 239,587 - mtnK LU632_RS01120 0.62 -0.7 239,640 + mtnK LU632_RS01120 0.67 +2.7 239,640 + mtnK LU632_RS01120 0.67 +0.8 239,640 + mtnK LU632_RS01120 0.67 +0.4
Or see this region's nucleotide sequence