Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00845

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00835 and zinT are separated by 76 nucleotideszinT and LU632_RS00845 are separated by 181 nucleotidesLU632_RS00845 and LU632_RS00850 overlap by 4 nucleotides LU632_RS00835: LU632_RS00835 - DeoR/GlpR family DNA-binding transcription regulator, at 181,888 to 182,664 _RS00835 LU632_RS00840: zinT - metal-binding protein ZinT, at 182,741 to 183,388 zinT LU632_RS00845: LU632_RS00845 - ABC transporter ATP-binding protein/permease, at 183,570 to 185,403 _RS00845 LU632_RS00850: LU632_RS00850 - GNAT family N-acetyltransferase, at 185,400 to 186,524 _RS00850 Position (kb) 183 184 185 186Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 182.577 kb on + strand, within LU632_RS00835at 182.577 kb on + strand, within LU632_RS00835at 182.617 kb on + strandat 182.692 kb on + strandat 182.692 kb on + strandat 182.910 kb on + strand, within zinTat 182.911 kb on - strand, within zinTat 182.979 kb on + strand, within zinTat 182.979 kb on - strand, within zinTat 182.980 kb on - strand, within zinTat 183.003 kb on + strand, within zinTat 183.004 kb on - strand, within zinTat 183.004 kb on - strand, within zinTat 183.010 kb on - strand, within zinTat 183.068 kb on - strand, within zinTat 183.074 kb on - strand, within zinTat 183.102 kb on + strand, within zinTat 183.102 kb on + strand, within zinTat 183.106 kb on - strand, within zinTat 183.182 kb on + strand, within zinTat 183.183 kb on - strand, within zinTat 183.187 kb on - strand, within zinTat 183.193 kb on + strand, within zinTat 183.449 kb on + strandat 183.451 kb on + strandat 183.452 kb on - strandat 183.504 kb on + strandat 183.637 kb on - strandat 183.656 kb on - strandat 183.665 kb on - strandat 183.698 kb on + strandat 183.698 kb on + strandat 183.728 kb on + strandat 183.729 kb on - strandat 183.729 kb on - strandat 183.734 kb on + strandat 183.774 kb on - strand, within LU632_RS00845at 183.938 kb on + strand, within LU632_RS00845at 183.939 kb on - strand, within LU632_RS00845at 183.942 kb on + strand, within LU632_RS00845at 183.942 kb on + strand, within LU632_RS00845at 183.942 kb on + strand, within LU632_RS00845at 183.942 kb on + strand, within LU632_RS00845at 183.943 kb on - strand, within LU632_RS00845at 183.943 kb on - strand, within LU632_RS00845at 183.943 kb on - strand, within LU632_RS00845at 183.943 kb on - strand, within LU632_RS00845at 183.943 kb on - strand, within LU632_RS00845at 184.078 kb on - strand, within LU632_RS00845at 184.086 kb on - strand, within LU632_RS00845at 184.093 kb on + strand, within LU632_RS00845at 184.094 kb on - strand, within LU632_RS00845at 184.094 kb on - strand, within LU632_RS00845at 184.180 kb on + strand, within LU632_RS00845at 184.181 kb on - strand, within LU632_RS00845at 184.189 kb on + strand, within LU632_RS00845at 184.309 kb on - strand, within LU632_RS00845at 184.399 kb on - strand, within LU632_RS00845at 184.526 kb on + strand, within LU632_RS00845at 184.526 kb on + strand, within LU632_RS00845at 184.579 kb on + strand, within LU632_RS00845at 184.680 kb on - strand, within LU632_RS00845at 184.802 kb on + strand, within LU632_RS00845at 184.803 kb on - strand, within LU632_RS00845at 184.803 kb on - strand, within LU632_RS00845at 184.855 kb on - strand, within LU632_RS00845at 184.855 kb on - strand, within LU632_RS00845at 184.896 kb on + strand, within LU632_RS00845at 184.896 kb on + strand, within LU632_RS00845at 184.896 kb on + strand, within LU632_RS00845at 184.896 kb on + strand, within LU632_RS00845at 184.897 kb on - strand, within LU632_RS00845at 184.901 kb on + strand, within LU632_RS00845at 184.912 kb on + strand, within LU632_RS00845at 184.912 kb on + strand, within LU632_RS00845at 184.913 kb on - strand, within LU632_RS00845at 184.913 kb on - strand, within LU632_RS00845at 184.941 kb on + strand, within LU632_RS00845at 184.942 kb on - strand, within LU632_RS00845at 184.942 kb on - strand, within LU632_RS00845at 185.103 kb on - strand, within LU632_RS00845at 185.103 kb on - strand, within LU632_RS00845at 185.226 kb on - strandat 185.354 kb on - strandat 185.354 kb on - strandat 185.354 kb on - strandat 185.824 kb on + strand, within LU632_RS00850at 185.842 kb on + strand, within LU632_RS00850at 185.842 kb on + strand, within LU632_RS00850at 185.863 kb on + strand, within LU632_RS00850at 185.964 kb on - strand, within LU632_RS00850at 185.969 kb on + strand, within LU632_RS00850at 186.189 kb on + strand, within LU632_RS00850at 186.190 kb on - strand, within LU632_RS00850at 186.242 kb on - strand, within LU632_RS00850at 186.296 kb on - strand, within LU632_RS00850at 186.296 kb on - strand, within LU632_RS00850at 186.296 kb on - strand, within LU632_RS00850

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
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182,577 + LU632_RS00835 0.89 +4.2
182,577 + LU632_RS00835 0.89 +5.6
182,617 + +5.7
182,692 + +0.1
182,692 + -0.1
182,910 + zinT LU632_RS00840 0.26 -0.0
182,911 - zinT LU632_RS00840 0.26 +0.2
182,979 + zinT LU632_RS00840 0.37 +0.9
182,979 - zinT LU632_RS00840 0.37 +0.1
182,980 - zinT LU632_RS00840 0.37 -0.8
183,003 + zinT LU632_RS00840 0.40 -0.0
183,004 - zinT LU632_RS00840 0.41 +0.1
183,004 - zinT LU632_RS00840 0.41 -1.2
183,010 - zinT LU632_RS00840 0.42 +0.4
183,068 - zinT LU632_RS00840 0.50 -0.3
183,074 - zinT LU632_RS00840 0.51 -2.0
183,102 + zinT LU632_RS00840 0.56 -0.3
183,102 + zinT LU632_RS00840 0.56 -2.0
183,106 - zinT LU632_RS00840 0.56 -1.3
183,182 + zinT LU632_RS00840 0.68 -3.1
183,183 - zinT LU632_RS00840 0.68 -0.1
183,187 - zinT LU632_RS00840 0.69 +1.1
183,193 + zinT LU632_RS00840 0.70 -1.2
183,449 + +1.4
183,451 + +2.7
183,452 - +0.6
183,504 + +1.6
183,637 - +0.2
183,656 - +0.2
183,665 - -0.9
183,698 + +1.2
183,698 + +0.2
183,728 + -0.4
183,729 - +0.3
183,729 - -1.9
183,734 + -2.2
183,774 - LU632_RS00845 0.11 +1.4
183,938 + LU632_RS00845 0.20 +0.9
183,939 - LU632_RS00845 0.20 -0.8
183,942 + LU632_RS00845 0.20 -2.6
183,942 + LU632_RS00845 0.20 -1.1
183,942 + LU632_RS00845 0.20 +2.6
183,942 + LU632_RS00845 0.20 +0.3
183,943 - LU632_RS00845 0.20 +0.8
183,943 - LU632_RS00845 0.20 -1.0
183,943 - LU632_RS00845 0.20 -0.1
183,943 - LU632_RS00845 0.20 -0.0
183,943 - LU632_RS00845 0.20 -0.8
184,078 - LU632_RS00845 0.28 -2.6
184,086 - LU632_RS00845 0.28 -0.2
184,093 + LU632_RS00845 0.29 -2.2
184,094 - LU632_RS00845 0.29 -1.8
184,094 - LU632_RS00845 0.29 -0.4
184,180 + LU632_RS00845 0.33 -0.2
184,181 - LU632_RS00845 0.33 +0.2
184,189 + LU632_RS00845 0.34 -1.8
184,309 - LU632_RS00845 0.40 -0.2
184,399 - LU632_RS00845 0.45 +3.4
184,526 + LU632_RS00845 0.52 -1.0
184,526 + LU632_RS00845 0.52 +1.0
184,579 + LU632_RS00845 0.55 -0.3
184,680 - LU632_RS00845 0.61 -2.0
184,802 + LU632_RS00845 0.67 -0.1
184,803 - LU632_RS00845 0.67 -1.4
184,803 - LU632_RS00845 0.67 -1.0
184,855 - LU632_RS00845 0.70 -2.3
184,855 - LU632_RS00845 0.70 +0.9
184,896 + LU632_RS00845 0.72 +0.5
184,896 + LU632_RS00845 0.72 +0.0
184,896 + LU632_RS00845 0.72 -0.4
184,896 + LU632_RS00845 0.72 +0.2
184,897 - LU632_RS00845 0.72 +0.8
184,901 + LU632_RS00845 0.73 -1.8
184,912 + LU632_RS00845 0.73 +0.1
184,912 + LU632_RS00845 0.73 +0.8
184,913 - LU632_RS00845 0.73 +1.8
184,913 - LU632_RS00845 0.73 -1.0
184,941 + LU632_RS00845 0.75 -2.2
184,942 - LU632_RS00845 0.75 -2.3
184,942 - LU632_RS00845 0.75 +0.8
185,103 - LU632_RS00845 0.84 -1.2
185,103 - LU632_RS00845 0.84 +0.4
185,226 - -0.5
185,354 - -0.9
185,354 - -2.0
185,354 - -2.2
185,824 + LU632_RS00850 0.38 +0.9
185,842 + LU632_RS00850 0.39 -2.6
185,842 + LU632_RS00850 0.39 +1.7
185,863 + LU632_RS00850 0.41 -1.8
185,964 - LU632_RS00850 0.50 +3.5
185,969 + LU632_RS00850 0.51 -1.4
186,189 + LU632_RS00850 0.70 +0.8
186,190 - LU632_RS00850 0.70 +1.8
186,242 - LU632_RS00850 0.75 -0.8
186,296 - LU632_RS00850 0.80 +0.1
186,296 - LU632_RS00850 0.80 +0.5
186,296 - LU632_RS00850 0.80 -0.8

Or see this region's nucleotide sequence