Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00625 and adhP are separated by 323 nucleotides adhP and LU632_RS00635 are separated by 421 nucleotides
LU632_RS00625: LU632_RS00625 - MFS transporter, at 127,716 to 129,320
_RS00625
LU632_RS00630: adhP - alcohol dehydrogenase AdhP, at 129,644 to 130,657
adhP
LU632_RS00635: LU632_RS00635 - hypothetical protein, at 131,079 to 131,258
_RS00635
Position (kb) 129
130
131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 128.752 kb on - strand, within LU632_RS00625 at 128.752 kb on - strand, within LU632_RS00625 at 128.754 kb on - strand, within LU632_RS00625 at 128.754 kb on - strand, within LU632_RS00625 at 128.809 kb on + strand, within LU632_RS00625 at 128.925 kb on + strand, within LU632_RS00625 at 128.926 kb on - strand, within LU632_RS00625 at 128.977 kb on + strand, within LU632_RS00625 at 128.977 kb on + strand, within LU632_RS00625 at 128.978 kb on - strand, within LU632_RS00625 at 128.989 kb on + strand, within LU632_RS00625 at 128.990 kb on - strand, within LU632_RS00625 at 128.992 kb on + strand, within LU632_RS00625 at 128.993 kb on - strand, within LU632_RS00625 at 128.993 kb on - strand, within LU632_RS00625 at 128.993 kb on - strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.999 kb on - strand, within LU632_RS00625 at 128.999 kb on - strand, within LU632_RS00625 at 128.999 kb on - strand, within LU632_RS00625 at 128.999 kb on - strand, within LU632_RS00625 at 129.006 kb on - strand, within LU632_RS00625 at 129.008 kb on + strand, within LU632_RS00625 at 129.028 kb on + strand, within LU632_RS00625 at 129.032 kb on + strand, within LU632_RS00625 at 129.033 kb on - strand, within LU632_RS00625 at 129.033 kb on - strand, within LU632_RS00625 at 129.036 kb on + strand, within LU632_RS00625 at 129.036 kb on + strand, within LU632_RS00625 at 129.121 kb on + strand, within LU632_RS00625 at 129.214 kb on + strand at 129.290 kb on - strand at 129.309 kb on - strand at 129.320 kb on + strand at 129.336 kb on + strand at 129.345 kb on + strand at 129.346 kb on - strand at 129.360 kb on - strand at 129.383 kb on - strand at 129.383 kb on - strand at 129.604 kb on + strand at 129.604 kb on + strand at 129.605 kb on - strand at 129.605 kb on - strand at 129.617 kb on + strand at 129.617 kb on + strand at 129.617 kb on + strand at 129.618 kb on - strand at 129.618 kb on - strand at 129.618 kb on - strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.620 kb on - strand at 129.621 kb on + strand at 129.621 kb on + strand at 129.621 kb on + strand at 129.621 kb on + strand at 129.621 kb on + strand at 129.806 kb on - strand, within adhP at 129.807 kb on + strand, within adhP at 129.948 kb on + strand, within adhP at 130.006 kb on + strand, within adhP at 130.007 kb on - strand, within adhP at 130.095 kb on - strand, within adhP at 130.146 kb on - strand, within adhP at 130.146 kb on - strand, within adhP at 130.165 kb on + strand, within adhP at 130.181 kb on + strand, within adhP at 130.225 kb on + strand, within adhP at 130.226 kb on - strand, within adhP at 130.226 kb on - strand, within adhP at 130.275 kb on + strand, within adhP at 130.370 kb on - strand, within adhP at 130.585 kb on + strand at 130.586 kb on - strand at 130.588 kb on + strand at 130.656 kb on - strand at 130.730 kb on - strand at 130.855 kb on + strand at 130.867 kb on - strand at 130.943 kb on + strand at 131.001 kb on - strand at 131.022 kb on + strand at 131.137 kb on - strand, within LU632_RS00635 at 131.156 kb on + strand, within LU632_RS00635 at 131.204 kb on + strand, within LU632_RS00635 at 131.303 kb on + strand at 131.304 kb on - strand at 131.308 kb on + strand at 131.309 kb on - strand at 131.309 kb on - strand at 131.331 kb on - strand at 131.365 kb on + strand at 131.365 kb on + strand at 131.366 kb on - strand at 131.366 kb on - strand at 131.369 kb on - strand at 131.396 kb on + strand at 131.427 kb on - strand at 131.437 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 128,752 - LU632_RS00625 0.65 +0.1 128,752 - LU632_RS00625 0.65 -0.0 128,754 - LU632_RS00625 0.65 -0.5 128,754 - LU632_RS00625 0.65 -0.4 128,809 + LU632_RS00625 0.68 -2.6 128,925 + LU632_RS00625 0.75 +0.5 128,926 - LU632_RS00625 0.75 +0.0 128,977 + LU632_RS00625 0.79 -0.7 128,977 + LU632_RS00625 0.79 -2.0 128,978 - LU632_RS00625 0.79 +0.9 128,989 + LU632_RS00625 0.79 +0.9 128,990 - LU632_RS00625 0.79 +1.1 128,992 + LU632_RS00625 0.80 -2.3 128,993 - LU632_RS00625 0.80 +1.3 128,993 - LU632_RS00625 0.80 -0.6 128,993 - LU632_RS00625 0.80 +1.7 128,998 + LU632_RS00625 0.80 -3.2 128,998 + LU632_RS00625 0.80 -0.2 128,998 + LU632_RS00625 0.80 -0.0 128,998 + LU632_RS00625 0.80 -0.9 128,998 + LU632_RS00625 0.80 +1.6 128,999 - LU632_RS00625 0.80 +1.5 128,999 - LU632_RS00625 0.80 -0.3 128,999 - LU632_RS00625 0.80 -1.4 128,999 - LU632_RS00625 0.80 +0.8 129,006 - LU632_RS00625 0.80 +0.2 129,008 + LU632_RS00625 0.80 +3.0 129,028 + LU632_RS00625 0.82 -0.2 129,032 + LU632_RS00625 0.82 +1.8 129,033 - LU632_RS00625 0.82 +1.6 129,033 - LU632_RS00625 0.82 -2.2 129,036 + LU632_RS00625 0.82 -1.0 129,036 + LU632_RS00625 0.82 +1.2 129,121 + LU632_RS00625 0.88 -1.7 129,214 + +1.8 129,290 - -0.6 129,309 - -0.7 129,320 + -1.3 129,336 + +0.8 129,345 + -2.0 129,346 - -2.4 129,360 - -1.5 129,383 - +1.8 129,383 - -0.1 129,604 + +0.5 129,604 + -1.9 129,605 - +0.6 129,605 - -1.5 129,617 + +1.3 129,617 + -0.3 129,617 + +0.0 129,618 - -1.0 129,618 - +0.4 129,618 - +1.1 129,619 + -1.1 129,619 + -0.2 129,619 + +0.8 129,619 + -1.2 129,620 - -0.2 129,621 + -0.4 129,621 + -1.0 129,621 + +2.4 129,621 + -2.0 129,621 + +0.3 129,806 - adhP LU632_RS00630 0.16 -0.2 129,807 + adhP LU632_RS00630 0.16 -0.9 129,948 + adhP LU632_RS00630 0.30 +0.1 130,006 + adhP LU632_RS00630 0.36 +1.4 130,007 - adhP LU632_RS00630 0.36 -1.4 130,095 - adhP LU632_RS00630 0.44 -0.6 130,146 - adhP LU632_RS00630 0.50 +1.1 130,146 - adhP LU632_RS00630 0.50 +0.7 130,165 + adhP LU632_RS00630 0.51 -0.4 130,181 + adhP LU632_RS00630 0.53 -0.2 130,225 + adhP LU632_RS00630 0.57 +0.2 130,226 - adhP LU632_RS00630 0.57 +1.7 130,226 - adhP LU632_RS00630 0.57 +0.1 130,275 + adhP LU632_RS00630 0.62 -3.1 130,370 - adhP LU632_RS00630 0.72 +1.0 130,585 + +0.7 130,586 - -0.4 130,588 + +0.7 130,656 - +1.7 130,730 - -0.7 130,855 + -1.5 130,867 - -1.2 130,943 + +0.5 131,001 - +3.0 131,022 + -0.3 131,137 - LU632_RS00635 0.32 -0.1 131,156 + LU632_RS00635 0.43 +0.4 131,204 + LU632_RS00635 0.69 -1.0 131,303 + -0.8 131,304 - +0.1 131,308 + -0.5 131,309 - -2.2 131,309 - +0.1 131,331 - +0.1 131,365 + -2.2 131,365 + +2.7 131,366 - -1.5 131,366 - +2.3 131,369 - -2.6 131,396 + +0.8 131,427 - -0.3 131,437 - +0.3
Or see this region's nucleotide sequence