Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00520 and LU632_RS00525 are separated by 70 nucleotides LU632_RS00525 and LU632_RS00530 are separated by 663 nucleotides
LU632_RS00520: LU632_RS00520 - hypothetical protein, at 106,376 to 107,581
_RS00520
LU632_RS00525: LU632_RS00525 - IpaD/SipD/SspD family type III secretion system needle tip protein, at 107,652 to 108,830
_RS00525
LU632_RS00530: LU632_RS00530 - hypothetical protein, at 109,494 to 113,189
_RS00530
Position (kb) 107
108
109 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 106.683 kb on + strand, within LU632_RS00520 at 106.684 kb on - strand, within LU632_RS00520 at 106.684 kb on - strand, within LU632_RS00520 at 106.738 kb on + strand, within LU632_RS00520 at 106.752 kb on + strand, within LU632_RS00520 at 106.758 kb on + strand, within LU632_RS00520 at 106.774 kb on + strand, within LU632_RS00520 at 106.793 kb on + strand, within LU632_RS00520 at 106.793 kb on + strand, within LU632_RS00520 at 106.794 kb on - strand, within LU632_RS00520 at 106.794 kb on - strand, within LU632_RS00520 at 106.862 kb on - strand, within LU632_RS00520 at 106.927 kb on + strand, within LU632_RS00520 at 106.927 kb on + strand, within LU632_RS00520 at 106.928 kb on - strand, within LU632_RS00520 at 106.931 kb on - strand, within LU632_RS00520 at 106.992 kb on + strand, within LU632_RS00520 at 106.992 kb on + strand, within LU632_RS00520 at 107.011 kb on + strand, within LU632_RS00520 at 107.011 kb on + strand, within LU632_RS00520 at 107.012 kb on - strand, within LU632_RS00520 at 107.060 kb on - strand, within LU632_RS00520 at 107.062 kb on + strand, within LU632_RS00520 at 107.065 kb on + strand, within LU632_RS00520 at 107.065 kb on + strand, within LU632_RS00520 at 107.134 kb on + strand, within LU632_RS00520 at 107.236 kb on - strand, within LU632_RS00520 at 108.250 kb on - strand, within LU632_RS00525 at 108.373 kb on + strand, within LU632_RS00525 at 108.453 kb on - strand, within LU632_RS00525 at 108.529 kb on + strand, within LU632_RS00525 at 108.549 kb on + strand, within LU632_RS00525 at 108.702 kb on - strand, within LU632_RS00525 at 108.741 kb on - strand at 108.750 kb on - strand at 108.912 kb on + strand at 109.312 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 106,683 + LU632_RS00520 0.25 +1.0 106,684 - LU632_RS00520 0.26 +1.2 106,684 - LU632_RS00520 0.26 +0.2 106,738 + LU632_RS00520 0.30 -0.4 106,752 + LU632_RS00520 0.31 +0.3 106,758 + LU632_RS00520 0.32 +1.3 106,774 + LU632_RS00520 0.33 +1.6 106,793 + LU632_RS00520 0.35 -0.6 106,793 + LU632_RS00520 0.35 +2.7 106,794 - LU632_RS00520 0.35 -0.9 106,794 - LU632_RS00520 0.35 -3.1 106,862 - LU632_RS00520 0.40 -1.2 106,927 + LU632_RS00520 0.46 +3.4 106,927 + LU632_RS00520 0.46 -0.6 106,928 - LU632_RS00520 0.46 -1.5 106,931 - LU632_RS00520 0.46 -1.5 106,992 + LU632_RS00520 0.51 +1.8 106,992 + LU632_RS00520 0.51 -2.6 107,011 + LU632_RS00520 0.53 -0.5 107,011 + LU632_RS00520 0.53 -0.2 107,012 - LU632_RS00520 0.53 -0.2 107,060 - LU632_RS00520 0.57 +0.0 107,062 + LU632_RS00520 0.57 +0.7 107,065 + LU632_RS00520 0.57 +0.5 107,065 + LU632_RS00520 0.57 +0.7 107,134 + LU632_RS00520 0.63 +0.1 107,236 - LU632_RS00520 0.71 +0.7 108,250 - LU632_RS00525 0.51 -0.4 108,373 + LU632_RS00525 0.61 -1.6 108,453 - LU632_RS00525 0.68 +0.9 108,529 + LU632_RS00525 0.74 -0.4 108,549 + LU632_RS00525 0.76 -0.4 108,702 - LU632_RS00525 0.89 +0.8 108,741 - -1.7 108,750 - -0.2 108,912 + +0.8 109,312 + +0.7
Or see this region's nucleotide sequence