Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00220

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00215 and LU632_RS00220 are separated by 25 nucleotidesLU632_RS00220 and LU632_RS00225 are separated by 299 nucleotidesLU632_RS00225 and LU632_RS00230 are separated by 29 nucleotides LU632_RS00215: LU632_RS00215 - N-acetylmuramoyl-L-alanine amidase, at 41,398 to 42,177 _RS00215 LU632_RS00220: LU632_RS00220 - family 10 glycosylhydrolase, at 42,203 to 43,480 _RS00220 LU632_RS00225: LU632_RS00225 - RcnB family protein, at 43,780 to 44,262 _RS00225 LU632_RS00230: LU632_RS00230 - HD domain-containing protein, at 44,292 to 44,882 _RS00230 Position (kb) 42 43 44Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 41.235 kb on - strandat 41.451 kb on - strandat 41.488 kb on + strand, within LU632_RS00215at 41.489 kb on - strand, within LU632_RS00215at 41.489 kb on - strand, within LU632_RS00215at 41.491 kb on - strand, within LU632_RS00215at 41.552 kb on - strand, within LU632_RS00215at 41.556 kb on + strand, within LU632_RS00215at 41.601 kb on - strand, within LU632_RS00215at 41.642 kb on + strand, within LU632_RS00215at 41.643 kb on - strand, within LU632_RS00215at 41.681 kb on - strand, within LU632_RS00215at 41.723 kb on + strand, within LU632_RS00215at 41.723 kb on + strand, within LU632_RS00215at 41.723 kb on + strand, within LU632_RS00215at 41.723 kb on + strand, within LU632_RS00215at 41.947 kb on + strand, within LU632_RS00215at 42.002 kb on + strand, within LU632_RS00215at 42.007 kb on - strand, within LU632_RS00215at 42.020 kb on - strand, within LU632_RS00215at 42.106 kb on - strandat 42.163 kb on + strandat 42.185 kb on + strandat 42.188 kb on + strandat 42.189 kb on - strandat 42.209 kb on + strandat 42.209 kb on + strandat 42.210 kb on - strandat 42.210 kb on - strandat 42.448 kb on - strand, within LU632_RS00220at 42.585 kb on + strand, within LU632_RS00220at 42.650 kb on - strand, within LU632_RS00220at 42.688 kb on + strand, within LU632_RS00220at 42.688 kb on + strand, within LU632_RS00220at 42.694 kb on - strand, within LU632_RS00220at 42.716 kb on + strand, within LU632_RS00220at 42.860 kb on + strand, within LU632_RS00220at 42.860 kb on + strand, within LU632_RS00220at 42.861 kb on - strand, within LU632_RS00220at 42.861 kb on - strand, within LU632_RS00220at 42.861 kb on - strand, within LU632_RS00220at 42.861 kb on - strand, within LU632_RS00220at 42.861 kb on - strand, within LU632_RS00220at 42.861 kb on - strand, within LU632_RS00220at 42.866 kb on + strand, within LU632_RS00220at 42.867 kb on - strand, within LU632_RS00220at 42.870 kb on - strand, within LU632_RS00220at 42.904 kb on + strand, within LU632_RS00220at 42.905 kb on - strand, within LU632_RS00220at 42.917 kb on + strand, within LU632_RS00220at 42.918 kb on - strand, within LU632_RS00220at 42.970 kb on - strand, within LU632_RS00220at 42.975 kb on + strand, within LU632_RS00220at 43.054 kb on + strand, within LU632_RS00220at 43.055 kb on - strand, within LU632_RS00220at 43.104 kb on - strand, within LU632_RS00220at 43.149 kb on + strand, within LU632_RS00220at 43.157 kb on + strand, within LU632_RS00220at 43.158 kb on - strand, within LU632_RS00220at 43.159 kb on + strand, within LU632_RS00220at 43.175 kb on + strand, within LU632_RS00220at 43.263 kb on - strand, within LU632_RS00220at 43.281 kb on - strand, within LU632_RS00220at 43.335 kb on + strand, within LU632_RS00220at 43.356 kb on + strandat 43.396 kb on - strandat 43.399 kb on - strandat 43.413 kb on - strandat 43.413 kb on - strandat 43.413 kb on - strandat 43.417 kb on - strandat 43.468 kb on + strandat 43.518 kb on + strandat 43.518 kb on + strandat 43.518 kb on + strandat 43.518 kb on + strandat 43.519 kb on - strandat 43.519 kb on - strandat 43.561 kb on + strandat 43.703 kb on + strandat 43.785 kb on + strandat 43.786 kb on - strandat 43.795 kb on + strandat 43.795 kb on + strandat 43.796 kb on - strandat 43.796 kb on - strandat 43.817 kb on + strandat 43.818 kb on - strandat 44.029 kb on + strand, within LU632_RS00225at 44.037 kb on - strand, within LU632_RS00225at 44.173 kb on + strand, within LU632_RS00225at 44.173 kb on + strand, within LU632_RS00225at 44.173 kb on + strand, within LU632_RS00225at 44.173 kb on + strand, within LU632_RS00225at 44.174 kb on - strand, within LU632_RS00225at 44.174 kb on - strand, within LU632_RS00225at 44.174 kb on - strand, within LU632_RS00225at 44.174 kb on - strand, within LU632_RS00225at 44.174 kb on - strand, within LU632_RS00225at 44.175 kb on + strand, within LU632_RS00225at 44.175 kb on + strand, within LU632_RS00225at 44.188 kb on + strand, within LU632_RS00225at 44.188 kb on + strand, within LU632_RS00225at 44.188 kb on + strand, within LU632_RS00225at 44.189 kb on - strand, within LU632_RS00225at 44.197 kb on + strand, within LU632_RS00225at 44.249 kb on - strandat 44.249 kb on - strandat 44.250 kb on + strandat 44.251 kb on - strandat 44.414 kb on + strand, within LU632_RS00230at 44.414 kb on + strand, within LU632_RS00230at 44.414 kb on + strand, within LU632_RS00230at 44.415 kb on - strand, within LU632_RS00230at 44.440 kb on - strand, within LU632_RS00230

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
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41,235 - +1.0
41,451 - +2.9
41,488 + LU632_RS00215 0.12 +2.2
41,489 - LU632_RS00215 0.12 +0.2
41,489 - LU632_RS00215 0.12 +0.7
41,491 - LU632_RS00215 0.12 +0.4
41,552 - LU632_RS00215 0.20 +0.8
41,556 + LU632_RS00215 0.20 +0.4
41,601 - LU632_RS00215 0.26 -2.3
41,642 + LU632_RS00215 0.31 -0.8
41,643 - LU632_RS00215 0.31 -0.4
41,681 - LU632_RS00215 0.36 +0.0
41,723 + LU632_RS00215 0.42 -1.7
41,723 + LU632_RS00215 0.42 -0.7
41,723 + LU632_RS00215 0.42 +0.9
41,723 + LU632_RS00215 0.42 +0.2
41,947 + LU632_RS00215 0.70 +0.3
42,002 + LU632_RS00215 0.77 -0.6
42,007 - LU632_RS00215 0.78 -0.1
42,020 - LU632_RS00215 0.80 -2.5
42,106 - +0.6
42,163 + -0.9
42,185 + +2.2
42,188 + +1.8
42,189 - +0.9
42,209 + -1.3
42,209 + -2.2
42,210 - -3.5
42,210 - -2.4
42,448 - LU632_RS00220 0.19 -2.5
42,585 + LU632_RS00220 0.30 -2.8
42,650 - LU632_RS00220 0.35 -2.9
42,688 + LU632_RS00220 0.38 +0.1
42,688 + LU632_RS00220 0.38 -1.1
42,694 - LU632_RS00220 0.38 -2.1
42,716 + LU632_RS00220 0.40 -0.7
42,860 + LU632_RS00220 0.51 -0.7
42,860 + LU632_RS00220 0.51 -2.1
42,861 - LU632_RS00220 0.51 +0.9
42,861 - LU632_RS00220 0.51 -2.5
42,861 - LU632_RS00220 0.51 -0.7
42,861 - LU632_RS00220 0.51 -1.1
42,861 - LU632_RS00220 0.51 -3.0
42,861 - LU632_RS00220 0.51 -0.8
42,866 + LU632_RS00220 0.52 -1.6
42,867 - LU632_RS00220 0.52 -2.7
42,870 - LU632_RS00220 0.52 -0.2
42,904 + LU632_RS00220 0.55 -1.6
42,905 - LU632_RS00220 0.55 +0.3
42,917 + LU632_RS00220 0.56 -2.8
42,918 - LU632_RS00220 0.56 -2.3
42,970 - LU632_RS00220 0.60 -3.1
42,975 + LU632_RS00220 0.60 -1.0
43,054 + LU632_RS00220 0.67 -0.5
43,055 - LU632_RS00220 0.67 -0.5
43,104 - LU632_RS00220 0.71 -1.5
43,149 + LU632_RS00220 0.74 -0.6
43,157 + LU632_RS00220 0.75 -1.0
43,158 - LU632_RS00220 0.75 -2.2
43,159 + LU632_RS00220 0.75 -2.3
43,175 + LU632_RS00220 0.76 -1.2
43,263 - LU632_RS00220 0.83 -1.7
43,281 - LU632_RS00220 0.84 -0.7
43,335 + LU632_RS00220 0.89 +0.5
43,356 + -2.4
43,396 - -1.3
43,399 - -0.9
43,413 - -0.5
43,413 - +0.3
43,413 - -0.5
43,417 - -0.1
43,468 + +1.5
43,518 + -0.0
43,518 + -1.3
43,518 + +0.3
43,518 + +0.3
43,519 - -0.6
43,519 - +0.9
43,561 + +0.3
43,703 + -0.5
43,785 + -1.0
43,786 - -0.8
43,795 + +0.4
43,795 + -0.3
43,796 - -0.0
43,796 - +0.6
43,817 + -1.1
43,818 - +1.2
44,029 + LU632_RS00225 0.52 -3.0
44,037 - LU632_RS00225 0.53 -1.0
44,173 + LU632_RS00225 0.81 -0.6
44,173 + LU632_RS00225 0.81 +0.9
44,173 + LU632_RS00225 0.81 -0.4
44,173 + LU632_RS00225 0.81 +0.6
44,174 - LU632_RS00225 0.82 -3.9
44,174 - LU632_RS00225 0.82 -0.4
44,174 - LU632_RS00225 0.82 -3.5
44,174 - LU632_RS00225 0.82 -0.7
44,174 - LU632_RS00225 0.82 -0.4
44,175 + LU632_RS00225 0.82 -0.1
44,175 + LU632_RS00225 0.82 -1.9
44,188 + LU632_RS00225 0.84 +0.9
44,188 + LU632_RS00225 0.84 +0.7
44,188 + LU632_RS00225 0.84 +2.5
44,189 - LU632_RS00225 0.85 +0.1
44,197 + LU632_RS00225 0.86 +2.7
44,249 - -3.2
44,249 - +0.6
44,250 + +1.7
44,251 - +0.4
44,414 + LU632_RS00230 0.21 +1.2
44,414 + LU632_RS00230 0.21 -1.0
44,414 + LU632_RS00230 0.21 -0.5
44,415 - LU632_RS00230 0.21 -0.5
44,440 - LU632_RS00230 0.25 +4.2

Or see this region's nucleotide sequence