Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00160 and LU632_RS00165 are separated by 39 nucleotides LU632_RS00165 and LU632_RS00170 are separated by 91 nucleotides LU632_RS00170 and LU632_RS00175 are separated by 89 nucleotides LU632_RS00175 and LU632_RS00180 are separated by 357 nucleotides
LU632_RS00160: LU632_RS00160 - IS5 family transposase, at 30,464 to 31,239
_RS00160
LU632_RS00165: LU632_RS00165 - IS6 family transposase, at 31,279 to 31,968
_RS00165
LU632_RS00170: LU632_RS00170 - hypothetical protein, at 32,060 to 32,641
_RS00170
LU632_RS00175: LU632_RS00175 - IS6 family transposase, at 32,731 to 33,212
_RS00175
LU632_RS00180: LU632_RS00180 - DUF3053 domain-containing protein, at 33,570 to 34,286
_RS00180
Position (kb) 32
33 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 31.462 kb on + strand, within LU632_RS00165 at 31.462 kb on + strand, within LU632_RS00165 at 31.695 kb on - strand, within LU632_RS00165 at 32.012 kb on + strand at 32.013 kb on - strand at 32.018 kb on + strand at 32.018 kb on + strand at 32.028 kb on + strand at 32.029 kb on - strand at 32.029 kb on - strand at 32.036 kb on + strand at 32.036 kb on + strand at 32.037 kb on - strand at 32.037 kb on - strand at 32.037 kb on - strand at 32.037 kb on - strand at 32.040 kb on + strand at 32.041 kb on - strand at 32.041 kb on - strand at 32.068 kb on + strand at 32.068 kb on + strand at 32.203 kb on + strand, within LU632_RS00170 at 32.203 kb on + strand, within LU632_RS00170 at 32.204 kb on - strand, within LU632_RS00170 at 32.206 kb on + strand, within LU632_RS00170 at 32.206 kb on + strand, within LU632_RS00170 at 32.206 kb on + strand, within LU632_RS00170 at 32.207 kb on - strand, within LU632_RS00170 at 32.207 kb on - strand, within LU632_RS00170 at 32.207 kb on - strand, within LU632_RS00170 at 32.207 kb on - strand, within LU632_RS00170 at 32.209 kb on - strand, within LU632_RS00170 at 32.296 kb on - strand, within LU632_RS00170 at 32.300 kb on - strand, within LU632_RS00170 at 32.300 kb on - strand, within LU632_RS00170 at 32.300 kb on - strand, within LU632_RS00170 at 32.368 kb on + strand, within LU632_RS00170 at 32.371 kb on + strand, within LU632_RS00170 at 32.371 kb on + strand, within LU632_RS00170 at 32.400 kb on + strand, within LU632_RS00170 at 32.485 kb on + strand, within LU632_RS00170 at 32.497 kb on + strand, within LU632_RS00170 at 32.507 kb on + strand, within LU632_RS00170 at 32.507 kb on + strand, within LU632_RS00170 at 32.507 kb on + strand, within LU632_RS00170 at 32.508 kb on - strand, within LU632_RS00170 at 32.575 kb on + strand, within LU632_RS00170 at 32.587 kb on + strand at 32.597 kb on - strand at 32.598 kb on + strand at 32.598 kb on + strand at 32.598 kb on + strand at 32.598 kb on + strand at 32.598 kb on + strand at 32.599 kb on - strand at 32.599 kb on - strand at 32.599 kb on - strand at 32.599 kb on - strand at 32.599 kb on - strand at 32.599 kb on - strand at 32.603 kb on - strand at 32.621 kb on + strand at 33.300 kb on + strand at 33.301 kb on - strand at 33.332 kb on + strand at 33.365 kb on + strand at 33.394 kb on + strand at 33.402 kb on - strand at 33.568 kb on + strand at 33.569 kb on - strand at 33.571 kb on + strand at 33.571 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 31,462 + LU632_RS00165 0.27 +1.2 31,462 + LU632_RS00165 0.27 +0.2 31,695 - LU632_RS00165 0.60 +1.7 32,012 + -1.5 32,013 - -0.7 32,018 + -1.2 32,018 + +0.6 32,028 + -3.3 32,029 - -0.5 32,029 - -0.4 32,036 + +2.3 32,036 + +0.4 32,037 - -1.4 32,037 - +0.7 32,037 - -2.2 32,037 - +0.4 32,040 + +0.2 32,041 - +0.8 32,041 - -1.6 32,068 + -1.2 32,068 + +0.6 32,203 + LU632_RS00170 0.25 +0.1 32,203 + LU632_RS00170 0.25 -2.0 32,204 - LU632_RS00170 0.25 +0.8 32,206 + LU632_RS00170 0.25 +0.5 32,206 + LU632_RS00170 0.25 +0.6 32,206 + LU632_RS00170 0.25 -1.0 32,207 - LU632_RS00170 0.25 -1.3 32,207 - LU632_RS00170 0.25 +1.4 32,207 - LU632_RS00170 0.25 +0.5 32,207 - LU632_RS00170 0.25 +1.3 32,209 - LU632_RS00170 0.26 -0.6 32,296 - LU632_RS00170 0.41 +0.2 32,300 - LU632_RS00170 0.41 -2.2 32,300 - LU632_RS00170 0.41 -1.2 32,300 - LU632_RS00170 0.41 -0.9 32,368 + LU632_RS00170 0.53 +0.7 32,371 + LU632_RS00170 0.53 +0.5 32,371 + LU632_RS00170 0.53 -2.3 32,400 + LU632_RS00170 0.58 -0.2 32,485 + LU632_RS00170 0.73 +0.8 32,497 + LU632_RS00170 0.75 +0.4 32,507 + LU632_RS00170 0.77 +0.3 32,507 + LU632_RS00170 0.77 +1.3 32,507 + LU632_RS00170 0.77 +0.5 32,508 - LU632_RS00170 0.77 +3.8 32,575 + LU632_RS00170 0.88 -0.2 32,587 + -2.2 32,597 - -0.7 32,598 + +0.6 32,598 + -1.3 32,598 + +3.2 32,598 + -0.1 32,598 + -0.2 32,599 - -1.6 32,599 - -2.5 32,599 - +0.5 32,599 - +0.9 32,599 - -2.6 32,599 - +0.8 32,603 - -0.1 32,621 + -2.9 33,300 + -0.6 33,301 - -1.0 33,332 + -0.0 33,365 + -0.9 33,394 + +1.1 33,402 - -0.5 33,568 + -0.5 33,569 - -0.4 33,571 + +1.1 33,571 + -1.5
Or see this region's nucleotide sequence