Strain Fitness in Erwinia amylovora T8 around OLJFJH_02620

Experiment: Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-9

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_02615 and OLJFJH_02620 are separated by 236 nucleotidesOLJFJH_02620 and OLJFJH_02625 are separated by 204 nucleotides OLJFJH_02615: OLJFJH_02615 - aspartate ammonia-lyase, at 472,776 to 474,212 _02615 OLJFJH_02620: OLJFJH_02620 - C4-dicarboxylate ABC transporter, at 474,449 to 475,750 _02620 OLJFJH_02625: OLJFJH_02625 - protein-disulfide reductase DsbD, at 475,955 to 477,670 _02625 Position (kb) 474 475 476Strain fitness (log2 ratio) -2 -1 0 1 2at 473.575 kb on + strand, within OLJFJH_02615at 473.605 kb on - strand, within OLJFJH_02615at 473.608 kb on + strand, within OLJFJH_02615at 473.609 kb on - strand, within OLJFJH_02615at 473.609 kb on - strand, within OLJFJH_02615at 473.609 kb on - strand, within OLJFJH_02615at 473.609 kb on - strand, within OLJFJH_02615at 473.609 kb on - strand, within OLJFJH_02615at 473.609 kb on - strand, within OLJFJH_02615at 473.857 kb on + strand, within OLJFJH_02615at 473.858 kb on - strand, within OLJFJH_02615at 473.858 kb on - strand, within OLJFJH_02615at 473.925 kb on + strand, within OLJFJH_02615at 473.926 kb on - strand, within OLJFJH_02615at 473.926 kb on - strand, within OLJFJH_02615at 473.985 kb on + strand, within OLJFJH_02615at 473.986 kb on - strand, within OLJFJH_02615at 473.994 kb on - strand, within OLJFJH_02615at 474.015 kb on + strand, within OLJFJH_02615at 474.174 kb on + strandat 474.174 kb on + strandat 474.176 kb on + strandat 474.339 kb on + strandat 474.354 kb on - strandat 474.358 kb on - strandat 474.358 kb on - strandat 474.398 kb on - strandat 474.399 kb on - strandat 474.411 kb on - strandat 474.411 kb on - strandat 474.431 kb on + strandat 474.434 kb on - strandat 474.434 kb on - strandat 474.434 kb on - strandat 474.434 kb on - strandat 474.436 kb on - strandat 474.448 kb on + strandat 474.448 kb on + strandat 474.454 kb on - strandat 474.553 kb on - strandat 474.662 kb on + strand, within OLJFJH_02620at 474.663 kb on - strand, within OLJFJH_02620at 474.707 kb on + strand, within OLJFJH_02620at 474.708 kb on - strand, within OLJFJH_02620at 474.709 kb on + strand, within OLJFJH_02620at 474.709 kb on + strand, within OLJFJH_02620at 474.710 kb on - strand, within OLJFJH_02620at 474.710 kb on - strand, within OLJFJH_02620at 474.717 kb on + strand, within OLJFJH_02620at 474.718 kb on - strand, within OLJFJH_02620at 474.738 kb on - strand, within OLJFJH_02620at 474.770 kb on - strand, within OLJFJH_02620at 474.941 kb on + strand, within OLJFJH_02620at 474.942 kb on - strand, within OLJFJH_02620at 475.009 kb on + strand, within OLJFJH_02620at 475.010 kb on - strand, within OLJFJH_02620at 475.159 kb on - strand, within OLJFJH_02620at 475.222 kb on + strand, within OLJFJH_02620at 475.223 kb on - strand, within OLJFJH_02620at 475.239 kb on + strand, within OLJFJH_02620at 475.239 kb on + strand, within OLJFJH_02620at 475.239 kb on + strand, within OLJFJH_02620at 475.243 kb on + strand, within OLJFJH_02620at 475.243 kb on + strand, within OLJFJH_02620at 475.244 kb on - strand, within OLJFJH_02620at 475.244 kb on - strand, within OLJFJH_02620at 475.273 kb on + strand, within OLJFJH_02620at 475.372 kb on + strand, within OLJFJH_02620at 475.373 kb on - strand, within OLJFJH_02620at 475.373 kb on - strand, within OLJFJH_02620at 475.390 kb on + strand, within OLJFJH_02620at 475.748 kb on + strandat 475.749 kb on - strandat 475.869 kb on + strandat 475.869 kb on + strandat 475.869 kb on + strandat 475.869 kb on + strandat 475.870 kb on - strandat 475.870 kb on - strandat 475.872 kb on + strandat 475.943 kb on + strandat 475.944 kb on - strandat 475.947 kb on + strandat 475.947 kb on + strandat 475.959 kb on + strandat 476.128 kb on - strand, within OLJFJH_02625at 476.141 kb on + strand, within OLJFJH_02625at 476.142 kb on - strand, within OLJFJH_02625at 476.142 kb on - strand, within OLJFJH_02625at 476.142 kb on - strand, within OLJFJH_02625at 476.509 kb on + strand, within OLJFJH_02625at 476.509 kb on + strand, within OLJFJH_02625at 476.609 kb on + strand, within OLJFJH_02625at 476.609 kb on + strand, within OLJFJH_02625at 476.609 kb on + strand, within OLJFJH_02625at 476.609 kb on + strand, within OLJFJH_02625at 476.609 kb on + strand, within OLJFJH_02625at 476.609 kb on + strand, within OLJFJH_02625at 476.609 kb on + strand, within OLJFJH_02625at 476.610 kb on - strand, within OLJFJH_02625at 476.610 kb on - strand, within OLJFJH_02625at 476.610 kb on - strand, within OLJFJH_02625at 476.610 kb on - strand, within OLJFJH_02625at 476.610 kb on - strand, within OLJFJH_02625at 476.610 kb on - strand, within OLJFJH_02625at 476.610 kb on - strand, within OLJFJH_02625at 476.613 kb on + strand, within OLJFJH_02625at 476.614 kb on - strand, within OLJFJH_02625at 476.633 kb on + strand, within OLJFJH_02625at 476.633 kb on + strand, within OLJFJH_02625at 476.633 kb on + strand, within OLJFJH_02625at 476.635 kb on + strand, within OLJFJH_02625at 476.689 kb on - strand, within OLJFJH_02625

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-9
remove
473,575 + OLJFJH_02615 0.56 -0.2
473,605 - OLJFJH_02615 0.58 -0.6
473,608 + OLJFJH_02615 0.58 -1.0
473,609 - OLJFJH_02615 0.58 -0.7
473,609 - OLJFJH_02615 0.58 -0.4
473,609 - OLJFJH_02615 0.58 +0.1
473,609 - OLJFJH_02615 0.58 -0.1
473,609 - OLJFJH_02615 0.58 -0.9
473,609 - OLJFJH_02615 0.58 +0.4
473,857 + OLJFJH_02615 0.75 +0.0
473,858 - OLJFJH_02615 0.75 -1.2
473,858 - OLJFJH_02615 0.75 +0.4
473,925 + OLJFJH_02615 0.80 +1.3
473,926 - OLJFJH_02615 0.80 -0.3
473,926 - OLJFJH_02615 0.80 -0.3
473,985 + OLJFJH_02615 0.84 +0.4
473,986 - OLJFJH_02615 0.84 -0.4
473,994 - OLJFJH_02615 0.85 -1.1
474,015 + OLJFJH_02615 0.86 +0.8
474,174 + +0.9
474,174 + +0.5
474,176 + +0.1
474,339 + +0.4
474,354 - -0.9
474,358 - +0.0
474,358 - -2.3
474,398 - -0.2
474,399 - -0.5
474,411 - -0.0
474,411 - -0.4
474,431 + +0.1
474,434 - -0.5
474,434 - -0.4
474,434 - -0.6
474,434 - -0.3
474,436 - -0.5
474,448 + -1.3
474,448 + -1.1
474,454 - -0.7
474,553 - -0.6
474,662 + OLJFJH_02620 0.16 -0.8
474,663 - OLJFJH_02620 0.16 +0.5
474,707 + OLJFJH_02620 0.20 -0.8
474,708 - OLJFJH_02620 0.20 -0.3
474,709 + OLJFJH_02620 0.20 -0.7
474,709 + OLJFJH_02620 0.20 -1.3
474,710 - OLJFJH_02620 0.20 -0.6
474,710 - OLJFJH_02620 0.20 -1.2
474,717 + OLJFJH_02620 0.21 -0.2
474,718 - OLJFJH_02620 0.21 +0.4
474,738 - OLJFJH_02620 0.22 -0.2
474,770 - OLJFJH_02620 0.25 -1.2
474,941 + OLJFJH_02620 0.38 -0.1
474,942 - OLJFJH_02620 0.38 -1.6
475,009 + OLJFJH_02620 0.43 -0.8
475,010 - OLJFJH_02620 0.43 -0.1
475,159 - OLJFJH_02620 0.55 -0.4
475,222 + OLJFJH_02620 0.59 +0.9
475,223 - OLJFJH_02620 0.59 +0.3
475,239 + OLJFJH_02620 0.61 -1.0
475,239 + OLJFJH_02620 0.61 +0.4
475,239 + OLJFJH_02620 0.61 +1.5
475,243 + OLJFJH_02620 0.61 -1.6
475,243 + OLJFJH_02620 0.61 -0.7
475,244 - OLJFJH_02620 0.61 +0.1
475,244 - OLJFJH_02620 0.61 -0.3
475,273 + OLJFJH_02620 0.63 -1.6
475,372 + OLJFJH_02620 0.71 -0.2
475,373 - OLJFJH_02620 0.71 +0.1
475,373 - OLJFJH_02620 0.71 -1.0
475,390 + OLJFJH_02620 0.72 -0.3
475,748 + -0.9
475,749 - -0.0
475,869 + +0.2
475,869 + +0.3
475,869 + -1.7
475,869 + -0.2
475,870 - +0.1
475,870 - -0.2
475,872 + +0.8
475,943 + +0.0
475,944 - +0.3
475,947 + -1.4
475,947 + -0.5
475,959 + +0.5
476,128 - OLJFJH_02625 0.10 +0.4
476,141 + OLJFJH_02625 0.11 -1.0
476,142 - OLJFJH_02625 0.11 +0.2
476,142 - OLJFJH_02625 0.11 +0.7
476,142 - OLJFJH_02625 0.11 +0.2
476,509 + OLJFJH_02625 0.32 +1.6
476,509 + OLJFJH_02625 0.32 -0.1
476,609 + OLJFJH_02625 0.38 +0.6
476,609 + OLJFJH_02625 0.38 +1.1
476,609 + OLJFJH_02625 0.38 +1.2
476,609 + OLJFJH_02625 0.38 -0.3
476,609 + OLJFJH_02625 0.38 +0.5
476,609 + OLJFJH_02625 0.38 +2.5
476,609 + OLJFJH_02625 0.38 +0.0
476,610 - OLJFJH_02625 0.38 -0.0
476,610 - OLJFJH_02625 0.38 +0.3
476,610 - OLJFJH_02625 0.38 +0.6
476,610 - OLJFJH_02625 0.38 -0.2
476,610 - OLJFJH_02625 0.38 -0.6
476,610 - OLJFJH_02625 0.38 +1.2
476,610 - OLJFJH_02625 0.38 -0.1
476,613 + OLJFJH_02625 0.38 +0.6
476,614 - OLJFJH_02625 0.38 -1.0
476,633 + OLJFJH_02625 0.40 +0.4
476,633 + OLJFJH_02625 0.40 +0.1
476,633 + OLJFJH_02625 0.40 -0.1
476,635 + OLJFJH_02625 0.40 +0.2
476,689 - OLJFJH_02625 0.43 +0.2

Or see this region's nucleotide sequence