Experiment: ABB 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS02475 and HMPREF1181_RS02480 are separated by 251 nucleotides HMPREF1181_RS02480 and HMPREF1181_RS02485 are separated by 9 nucleotides HMPREF1181_RS02485 and HMPREF1181_RS02490 are separated by 55 nucleotides
HMPREF1181_RS02475: HMPREF1181_RS02475 - alpha-1,2-fucosyltransferase, at 619,074 to 619,937
_RS02475
HMPREF1181_RS02480: HMPREF1181_RS02480 - glycosyltransferase, at 620,189 to 621,208
_RS02480
HMPREF1181_RS02485: HMPREF1181_RS02485 - glycosyltransferase family 8 protein, at 621,218 to 622,138
_RS02485
HMPREF1181_RS02490: HMPREF1181_RS02490 - glycosyltransferase family 2 protein, at 622,194 to 622,841
_RS02490
Position (kb) 620
621
622 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 619.223 kb on + strand, within HMPREF1181_RS02475 at 619.229 kb on + strand, within HMPREF1181_RS02475 at 619.342 kb on + strand, within HMPREF1181_RS02475 at 619.366 kb on + strand, within HMPREF1181_RS02475 at 619.367 kb on - strand, within HMPREF1181_RS02475 at 619.369 kb on + strand, within HMPREF1181_RS02475 at 619.418 kb on - strand, within HMPREF1181_RS02475 at 619.472 kb on - strand, within HMPREF1181_RS02475 at 619.492 kb on - strand, within HMPREF1181_RS02475 at 619.519 kb on - strand, within HMPREF1181_RS02475 at 619.519 kb on - strand, within HMPREF1181_RS02475 at 619.584 kb on + strand, within HMPREF1181_RS02475 at 619.584 kb on + strand, within HMPREF1181_RS02475 at 619.584 kb on + strand, within HMPREF1181_RS02475 at 619.584 kb on + strand, within HMPREF1181_RS02475 at 619.584 kb on + strand, within HMPREF1181_RS02475 at 619.584 kb on + strand, within HMPREF1181_RS02475 at 619.585 kb on - strand, within HMPREF1181_RS02475 at 619.585 kb on - strand, within HMPREF1181_RS02475 at 619.640 kb on - strand, within HMPREF1181_RS02475 at 619.641 kb on + strand, within HMPREF1181_RS02475 at 619.644 kb on + strand, within HMPREF1181_RS02475 at 619.768 kb on - strand, within HMPREF1181_RS02475 at 619.819 kb on + strand, within HMPREF1181_RS02475 at 619.819 kb on + strand, within HMPREF1181_RS02475 at 619.819 kb on + strand, within HMPREF1181_RS02475 at 619.889 kb on - strand at 619.938 kb on - strand at 620.127 kb on - strand at 620.176 kb on - strand at 620.187 kb on - strand at 620.187 kb on - strand at 620.207 kb on + strand at 620.208 kb on - strand at 620.210 kb on - strand at 620.258 kb on + strand at 620.259 kb on - strand at 620.259 kb on - strand at 620.338 kb on + strand, within HMPREF1181_RS02480 at 620.345 kb on + strand, within HMPREF1181_RS02480 at 620.346 kb on - strand, within HMPREF1181_RS02480 at 620.367 kb on - strand, within HMPREF1181_RS02480 at 620.370 kb on - strand, within HMPREF1181_RS02480 at 620.371 kb on + strand, within HMPREF1181_RS02480 at 620.374 kb on + strand, within HMPREF1181_RS02480 at 620.374 kb on + strand, within HMPREF1181_RS02480 at 620.422 kb on + strand, within HMPREF1181_RS02480 at 620.422 kb on + strand, within HMPREF1181_RS02480 at 620.423 kb on - strand, within HMPREF1181_RS02480 at 620.428 kb on + strand, within HMPREF1181_RS02480 at 620.428 kb on + strand, within HMPREF1181_RS02480 at 620.432 kb on + strand, within HMPREF1181_RS02480 at 620.435 kb on + strand, within HMPREF1181_RS02480 at 620.435 kb on + strand, within HMPREF1181_RS02480 at 620.436 kb on - strand, within HMPREF1181_RS02480 at 620.454 kb on + strand, within HMPREF1181_RS02480 at 620.490 kb on - strand, within HMPREF1181_RS02480 at 620.547 kb on - strand, within HMPREF1181_RS02480 at 620.562 kb on + strand, within HMPREF1181_RS02480 at 620.562 kb on + strand, within HMPREF1181_RS02480 at 620.563 kb on - strand, within HMPREF1181_RS02480 at 620.565 kb on - strand, within HMPREF1181_RS02480 at 620.625 kb on - strand, within HMPREF1181_RS02480 at 620.638 kb on + strand, within HMPREF1181_RS02480 at 620.662 kb on + strand, within HMPREF1181_RS02480 at 620.711 kb on - strand, within HMPREF1181_RS02480 at 620.868 kb on - strand, within HMPREF1181_RS02480 at 620.876 kb on - strand, within HMPREF1181_RS02480 at 620.893 kb on + strand, within HMPREF1181_RS02480 at 621.009 kb on - strand, within HMPREF1181_RS02480 at 621.009 kb on - strand, within HMPREF1181_RS02480 at 621.012 kb on + strand, within HMPREF1181_RS02480 at 621.013 kb on - strand, within HMPREF1181_RS02480 at 621.051 kb on + strand, within HMPREF1181_RS02480 at 621.057 kb on - strand, within HMPREF1181_RS02480 at 621.110 kb on + strand at 621.110 kb on + strand at 621.162 kb on + strand at 621.207 kb on - strand at 621.226 kb on + strand at 621.227 kb on - strand at 621.227 kb on - strand at 621.238 kb on + strand at 621.295 kb on + strand at 621.322 kb on + strand, within HMPREF1181_RS02485 at 621.323 kb on - strand, within HMPREF1181_RS02485 at 621.327 kb on + strand, within HMPREF1181_RS02485 at 621.327 kb on + strand, within HMPREF1181_RS02485 at 621.328 kb on - strand, within HMPREF1181_RS02485 at 621.363 kb on + strand, within HMPREF1181_RS02485 at 621.404 kb on + strand, within HMPREF1181_RS02485 at 621.404 kb on + strand, within HMPREF1181_RS02485 at 621.404 kb on + strand, within HMPREF1181_RS02485 at 621.405 kb on - strand, within HMPREF1181_RS02485 at 621.477 kb on - strand, within HMPREF1181_RS02485 at 621.477 kb on - strand, within HMPREF1181_RS02485 at 621.525 kb on + strand, within HMPREF1181_RS02485 at 621.526 kb on - strand, within HMPREF1181_RS02485 at 621.526 kb on - strand, within HMPREF1181_RS02485 at 621.530 kb on + strand, within HMPREF1181_RS02485 at 621.530 kb on + strand, within HMPREF1181_RS02485 at 621.531 kb on - strand, within HMPREF1181_RS02485 at 621.550 kb on - strand, within HMPREF1181_RS02485 at 621.550 kb on - strand, within HMPREF1181_RS02485 at 621.552 kb on + strand, within HMPREF1181_RS02485 at 621.563 kb on - strand, within HMPREF1181_RS02485 at 621.660 kb on - strand, within HMPREF1181_RS02485 at 621.660 kb on - strand, within HMPREF1181_RS02485 at 621.664 kb on + strand, within HMPREF1181_RS02485 at 621.665 kb on - strand, within HMPREF1181_RS02485 at 621.728 kb on - strand, within HMPREF1181_RS02485 at 621.728 kb on - strand, within HMPREF1181_RS02485 at 621.765 kb on - strand, within HMPREF1181_RS02485 at 621.784 kb on + strand, within HMPREF1181_RS02485 at 621.944 kb on + strand, within HMPREF1181_RS02485 at 621.944 kb on + strand, within HMPREF1181_RS02485 at 621.945 kb on - strand, within HMPREF1181_RS02485 at 621.947 kb on - strand, within HMPREF1181_RS02485 at 621.969 kb on - strand, within HMPREF1181_RS02485 at 621.976 kb on + strand, within HMPREF1181_RS02485 at 621.977 kb on - strand, within HMPREF1181_RS02485 at 622.002 kb on - strand, within HMPREF1181_RS02485 at 622.003 kb on + strand, within HMPREF1181_RS02485 at 622.004 kb on - strand, within HMPREF1181_RS02485 at 622.016 kb on - strand, within HMPREF1181_RS02485 at 622.078 kb on + strand at 622.078 kb on + strand at 622.078 kb on + strand at 622.078 kb on + strand at 622.118 kb on + strand at 622.208 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ABB 1 x (C) complex media remove 619,223 + HMPREF1181_RS02475 0.17 -0.3 619,229 + HMPREF1181_RS02475 0.18 -0.8 619,342 + HMPREF1181_RS02475 0.31 +0.4 619,366 + HMPREF1181_RS02475 0.34 -0.2 619,367 - HMPREF1181_RS02475 0.34 -0.3 619,369 + HMPREF1181_RS02475 0.34 +0.1 619,418 - HMPREF1181_RS02475 0.40 +0.0 619,472 - HMPREF1181_RS02475 0.46 -0.8 619,492 - HMPREF1181_RS02475 0.48 -0.2 619,519 - HMPREF1181_RS02475 0.52 -0.6 619,519 - HMPREF1181_RS02475 0.52 +0.0 619,584 + HMPREF1181_RS02475 0.59 +0.3 619,584 + HMPREF1181_RS02475 0.59 -0.4 619,584 + HMPREF1181_RS02475 0.59 +0.2 619,584 + HMPREF1181_RS02475 0.59 -0.4 619,584 + HMPREF1181_RS02475 0.59 +0.3 619,584 + HMPREF1181_RS02475 0.59 +0.5 619,585 - HMPREF1181_RS02475 0.59 +0.1 619,585 - HMPREF1181_RS02475 0.59 +0.2 619,640 - HMPREF1181_RS02475 0.66 +0.1 619,641 + HMPREF1181_RS02475 0.66 -0.3 619,644 + HMPREF1181_RS02475 0.66 +0.1 619,768 - HMPREF1181_RS02475 0.80 +0.0 619,819 + HMPREF1181_RS02475 0.86 -1.1 619,819 + HMPREF1181_RS02475 0.86 -3.1 619,819 + HMPREF1181_RS02475 0.86 +0.2 619,889 - -0.0 619,938 - +0.1 620,127 - +0.7 620,176 - -0.4 620,187 - -0.1 620,187 - +0.3 620,207 + -0.1 620,208 - -0.0 620,210 - -0.1 620,258 + -0.4 620,259 - +0.2 620,259 - +0.2 620,338 + HMPREF1181_RS02480 0.15 -0.1 620,345 + HMPREF1181_RS02480 0.15 -1.3 620,346 - HMPREF1181_RS02480 0.15 -0.3 620,367 - HMPREF1181_RS02480 0.17 +0.0 620,370 - HMPREF1181_RS02480 0.18 -0.0 620,371 + HMPREF1181_RS02480 0.18 -0.4 620,374 + HMPREF1181_RS02480 0.18 -1.2 620,374 + HMPREF1181_RS02480 0.18 -0.2 620,422 + HMPREF1181_RS02480 0.23 -0.1 620,422 + HMPREF1181_RS02480 0.23 +0.6 620,423 - HMPREF1181_RS02480 0.23 -0.6 620,428 + HMPREF1181_RS02480 0.23 -0.0 620,428 + HMPREF1181_RS02480 0.23 -1.0 620,432 + HMPREF1181_RS02480 0.24 -0.5 620,435 + HMPREF1181_RS02480 0.24 -0.8 620,435 + HMPREF1181_RS02480 0.24 -0.5 620,436 - HMPREF1181_RS02480 0.24 -0.1 620,454 + HMPREF1181_RS02480 0.26 -0.1 620,490 - HMPREF1181_RS02480 0.30 -0.2 620,547 - HMPREF1181_RS02480 0.35 -0.3 620,562 + HMPREF1181_RS02480 0.37 -0.2 620,562 + HMPREF1181_RS02480 0.37 -0.5 620,563 - HMPREF1181_RS02480 0.37 -0.4 620,565 - HMPREF1181_RS02480 0.37 -1.1 620,625 - HMPREF1181_RS02480 0.43 -0.7 620,638 + HMPREF1181_RS02480 0.44 -0.1 620,662 + HMPREF1181_RS02480 0.46 -0.6 620,711 - HMPREF1181_RS02480 0.51 -0.7 620,868 - HMPREF1181_RS02480 0.67 -0.7 620,876 - HMPREF1181_RS02480 0.67 -0.0 620,893 + HMPREF1181_RS02480 0.69 -0.4 621,009 - HMPREF1181_RS02480 0.80 -0.5 621,009 - HMPREF1181_RS02480 0.80 +0.1 621,012 + HMPREF1181_RS02480 0.81 -0.2 621,013 - HMPREF1181_RS02480 0.81 -0.7 621,051 + HMPREF1181_RS02480 0.85 -0.1 621,057 - HMPREF1181_RS02480 0.85 +0.0 621,110 + +0.3 621,110 + -0.2 621,162 + -0.4 621,207 - -0.8 621,226 + -0.8 621,227 - -0.3 621,227 - +0.2 621,238 + +0.1 621,295 + +0.1 621,322 + HMPREF1181_RS02485 0.11 -0.1 621,323 - HMPREF1181_RS02485 0.11 -0.6 621,327 + HMPREF1181_RS02485 0.12 -0.2 621,327 + HMPREF1181_RS02485 0.12 -0.3 621,328 - HMPREF1181_RS02485 0.12 -0.1 621,363 + HMPREF1181_RS02485 0.16 +0.8 621,404 + HMPREF1181_RS02485 0.20 -0.1 621,404 + HMPREF1181_RS02485 0.20 +0.0 621,404 + HMPREF1181_RS02485 0.20 +0.0 621,405 - HMPREF1181_RS02485 0.20 -1.1 621,477 - HMPREF1181_RS02485 0.28 -0.2 621,477 - HMPREF1181_RS02485 0.28 -0.6 621,525 + HMPREF1181_RS02485 0.33 -1.8 621,526 - HMPREF1181_RS02485 0.33 +0.0 621,526 - HMPREF1181_RS02485 0.33 +0.1 621,530 + HMPREF1181_RS02485 0.34 +0.5 621,530 + HMPREF1181_RS02485 0.34 -0.8 621,531 - HMPREF1181_RS02485 0.34 -0.8 621,550 - HMPREF1181_RS02485 0.36 +0.4 621,550 - HMPREF1181_RS02485 0.36 -0.7 621,552 + HMPREF1181_RS02485 0.36 -0.7 621,563 - HMPREF1181_RS02485 0.37 -0.6 621,660 - HMPREF1181_RS02485 0.48 +0.7 621,660 - HMPREF1181_RS02485 0.48 -0.1 621,664 + HMPREF1181_RS02485 0.48 -0.5 621,665 - HMPREF1181_RS02485 0.49 -0.7 621,728 - HMPREF1181_RS02485 0.55 -0.3 621,728 - HMPREF1181_RS02485 0.55 -1.5 621,765 - HMPREF1181_RS02485 0.59 -1.2 621,784 + HMPREF1181_RS02485 0.61 -0.4 621,944 + HMPREF1181_RS02485 0.79 -1.3 621,944 + HMPREF1181_RS02485 0.79 -0.6 621,945 - HMPREF1181_RS02485 0.79 -0.6 621,947 - HMPREF1181_RS02485 0.79 +1.2 621,969 - HMPREF1181_RS02485 0.82 +0.2 621,976 + HMPREF1181_RS02485 0.82 -0.7 621,977 - HMPREF1181_RS02485 0.82 -1.2 622,002 - HMPREF1181_RS02485 0.85 -0.5 622,003 + HMPREF1181_RS02485 0.85 -1.5 622,004 - HMPREF1181_RS02485 0.85 +0.0 622,016 - HMPREF1181_RS02485 0.87 +0.4 622,078 + +0.6 622,078 + -1.4 622,078 + -1.2 622,078 + -0.3 622,118 + +0.5 622,208 + -0.1
Or see this region's nucleotide sequence