Experiment: D-Maltose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS07825 and HMPREF1181_RS07830 are separated by 174 nucleotides HMPREF1181_RS07830 and HMPREF1181_RS17825 overlap by 4 nucleotides HMPREF1181_RS17825 and HMPREF1181_RS07835 are separated by 186 nucleotides
HMPREF1181_RS07825: HMPREF1181_RS07825 - carbohydate-binding domain-containing protein, at 59,432 to 61,933
_RS07825
HMPREF1181_RS07830: HMPREF1181_RS07830 - NADP-dependent malic enzyme, at 62,108 to 64,396
_RS07830
HMPREF1181_RS17825: HMPREF1181_RS17825 - hypothetical protein, at 64,393 to 64,566
_RS17825
HMPREF1181_RS07835: HMPREF1181_RS07835 - NADP-specific glutamate dehydrogenase, at 64,753 to 66,090
_RS07835
Position (kb) 62
63
64
65 Strain fitness (log2 ratio) -2
-1
0
1 at 61.155 kb on + strand, within HMPREF1181_RS07825 at 61.158 kb on + strand, within HMPREF1181_RS07825 at 61.159 kb on - strand, within HMPREF1181_RS07825 at 61.242 kb on + strand, within HMPREF1181_RS07825 at 61.370 kb on + strand, within HMPREF1181_RS07825 at 61.370 kb on + strand, within HMPREF1181_RS07825 at 61.371 kb on - strand, within HMPREF1181_RS07825 at 61.373 kb on - strand, within HMPREF1181_RS07825 at 61.373 kb on - strand, within HMPREF1181_RS07825 at 61.373 kb on - strand, within HMPREF1181_RS07825 at 61.649 kb on - strand, within HMPREF1181_RS07825 at 61.728 kb on + strand at 61.729 kb on - strand at 61.791 kb on + strand at 61.811 kb on - strand at 61.811 kb on - strand at 62.015 kb on + strand at 62.104 kb on + strand at 62.197 kb on + strand at 62.279 kb on + strand at 62.281 kb on + strand at 62.307 kb on + strand at 62.353 kb on - strand, within HMPREF1181_RS07830 at 62.409 kb on - strand, within HMPREF1181_RS07830 at 62.424 kb on + strand, within HMPREF1181_RS07830 at 62.425 kb on - strand, within HMPREF1181_RS07830 at 62.573 kb on - strand, within HMPREF1181_RS07830 at 62.647 kb on - strand, within HMPREF1181_RS07830 at 62.723 kb on + strand, within HMPREF1181_RS07830 at 62.926 kb on - strand, within HMPREF1181_RS07830 at 62.971 kb on + strand, within HMPREF1181_RS07830 at 62.982 kb on + strand, within HMPREF1181_RS07830 at 62.983 kb on - strand, within HMPREF1181_RS07830 at 62.987 kb on + strand, within HMPREF1181_RS07830 at 62.987 kb on + strand, within HMPREF1181_RS07830 at 63.018 kb on + strand, within HMPREF1181_RS07830 at 63.018 kb on + strand, within HMPREF1181_RS07830 at 63.019 kb on - strand, within HMPREF1181_RS07830 at 63.029 kb on - strand, within HMPREF1181_RS07830 at 63.083 kb on - strand, within HMPREF1181_RS07830 at 63.083 kb on - strand, within HMPREF1181_RS07830 at 63.203 kb on + strand, within HMPREF1181_RS07830 at 63.203 kb on + strand, within HMPREF1181_RS07830 at 63.204 kb on - strand, within HMPREF1181_RS07830 at 63.236 kb on + strand, within HMPREF1181_RS07830 at 63.466 kb on + strand, within HMPREF1181_RS07830 at 63.503 kb on - strand, within HMPREF1181_RS07830 at 63.678 kb on - strand, within HMPREF1181_RS07830 at 63.780 kb on - strand, within HMPREF1181_RS07830 at 63.810 kb on + strand, within HMPREF1181_RS07830 at 64.001 kb on + strand, within HMPREF1181_RS07830 at 64.061 kb on + strand, within HMPREF1181_RS07830 at 64.061 kb on + strand, within HMPREF1181_RS07830 at 64.077 kb on - strand, within HMPREF1181_RS07830 at 64.189 kb on + strand at 64.224 kb on - strand at 64.330 kb on + strand at 64.336 kb on - strand at 64.350 kb on + strand at 64.456 kb on + strand, within HMPREF1181_RS17825 at 64.461 kb on - strand, within HMPREF1181_RS17825 at 64.461 kb on - strand, within HMPREF1181_RS17825 at 64.463 kb on + strand, within HMPREF1181_RS17825 at 64.542 kb on - strand, within HMPREF1181_RS17825 at 64.660 kb on + strand at 64.719 kb on + strand at 64.738 kb on + strand at 64.738 kb on + strand at 64.752 kb on + strand at 64.770 kb on - strand at 64.773 kb on - strand at 64.773 kb on - strand at 64.773 kb on - strand at 64.824 kb on - strand at 64.855 kb on + strand at 64.856 kb on - strand at 64.961 kb on + strand, within HMPREF1181_RS07835 at 64.962 kb on - strand, within HMPREF1181_RS07835 at 65.101 kb on - strand, within HMPREF1181_RS07835 at 65.288 kb on - strand, within HMPREF1181_RS07835 at 65.390 kb on - strand, within HMPREF1181_RS07835
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mM (C) remove 61,155 + HMPREF1181_RS07825 0.69 -0.0 61,158 + HMPREF1181_RS07825 0.69 -0.1 61,159 - HMPREF1181_RS07825 0.69 -0.1 61,242 + HMPREF1181_RS07825 0.72 +0.0 61,370 + HMPREF1181_RS07825 0.77 +0.1 61,370 + HMPREF1181_RS07825 0.77 -0.1 61,371 - HMPREF1181_RS07825 0.77 +0.2 61,373 - HMPREF1181_RS07825 0.78 -0.7 61,373 - HMPREF1181_RS07825 0.78 +0.2 61,373 - HMPREF1181_RS07825 0.78 -0.3 61,649 - HMPREF1181_RS07825 0.89 +0.8 61,728 + +0.0 61,729 - +1.2 61,791 + -0.1 61,811 - +0.1 61,811 - -0.2 62,015 + +0.2 62,104 + -0.4 62,197 + -1.4 62,279 + -0.2 62,281 + -1.5 62,307 + -1.4 62,353 - HMPREF1181_RS07830 0.11 -0.0 62,409 - HMPREF1181_RS07830 0.13 -0.9 62,424 + HMPREF1181_RS07830 0.14 -0.5 62,425 - HMPREF1181_RS07830 0.14 -0.7 62,573 - HMPREF1181_RS07830 0.20 -0.8 62,647 - HMPREF1181_RS07830 0.24 +0.4 62,723 + HMPREF1181_RS07830 0.27 -0.7 62,926 - HMPREF1181_RS07830 0.36 -1.2 62,971 + HMPREF1181_RS07830 0.38 -0.2 62,982 + HMPREF1181_RS07830 0.38 -0.4 62,983 - HMPREF1181_RS07830 0.38 -2.2 62,987 + HMPREF1181_RS07830 0.38 -0.7 62,987 + HMPREF1181_RS07830 0.38 -0.5 63,018 + HMPREF1181_RS07830 0.40 -0.4 63,018 + HMPREF1181_RS07830 0.40 +0.7 63,019 - HMPREF1181_RS07830 0.40 -1.2 63,029 - HMPREF1181_RS07830 0.40 +0.2 63,083 - HMPREF1181_RS07830 0.43 -0.3 63,083 - HMPREF1181_RS07830 0.43 -0.9 63,203 + HMPREF1181_RS07830 0.48 -0.4 63,203 + HMPREF1181_RS07830 0.48 -0.5 63,204 - HMPREF1181_RS07830 0.48 -0.7 63,236 + HMPREF1181_RS07830 0.49 -0.8 63,466 + HMPREF1181_RS07830 0.59 -0.2 63,503 - HMPREF1181_RS07830 0.61 +0.3 63,678 - HMPREF1181_RS07830 0.69 -1.2 63,780 - HMPREF1181_RS07830 0.73 -0.8 63,810 + HMPREF1181_RS07830 0.74 -0.1 64,001 + HMPREF1181_RS07830 0.83 -0.8 64,061 + HMPREF1181_RS07830 0.85 -0.2 64,061 + HMPREF1181_RS07830 0.85 +0.0 64,077 - HMPREF1181_RS07830 0.86 -0.4 64,189 + +0.3 64,224 - -0.5 64,330 + -0.1 64,336 - +0.3 64,350 + -0.5 64,456 + HMPREF1181_RS17825 0.36 -0.5 64,461 - HMPREF1181_RS17825 0.39 -0.7 64,461 - HMPREF1181_RS17825 0.39 -1.2 64,463 + HMPREF1181_RS17825 0.40 -0.8 64,542 - HMPREF1181_RS17825 0.86 +1.0 64,660 + -1.1 64,719 + -0.3 64,738 + -0.5 64,738 + -0.7 64,752 + -1.3 64,770 - -0.9 64,773 - -0.4 64,773 - -1.4 64,773 - -1.6 64,824 - -0.4 64,855 + -0.7 64,856 - -0.8 64,961 + HMPREF1181_RS07835 0.16 +0.4 64,962 - HMPREF1181_RS07835 0.16 -2.2 65,101 - HMPREF1181_RS07835 0.26 -0.7 65,288 - HMPREF1181_RS07835 0.40 -2.5 65,390 - HMPREF1181_RS07835 0.48 +0.4
Or see this region's nucleotide sequence