Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS15520 and HMPREF1181_RS15525 are separated by 13 nucleotides HMPREF1181_RS15525 and HMPREF1181_RS15530 are separated by 19 nucleotides
HMPREF1181_RS15520: HMPREF1181_RS15520 - glycosyltransferase, at 52,171 to 53,343
_RS15520
HMPREF1181_RS15525: HMPREF1181_RS15525 - ABC transporter permease, at 53,357 to 54,601
_RS15525
HMPREF1181_RS15530: HMPREF1181_RS15530 - pyridoxal phosphate-dependent aminotransferase, at 54,621 to 55,820
_RS15530
Position (kb) 53
54
55 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 52.690 kb on + strand, within HMPREF1181_RS15520 at 52.691 kb on - strand, within HMPREF1181_RS15520 at 52.692 kb on + strand, within HMPREF1181_RS15520 at 52.693 kb on - strand, within HMPREF1181_RS15520 at 52.795 kb on + strand, within HMPREF1181_RS15520 at 52.796 kb on - strand, within HMPREF1181_RS15520 at 52.840 kb on + strand, within HMPREF1181_RS15520 at 53.107 kb on - strand, within HMPREF1181_RS15520 at 53.123 kb on + strand, within HMPREF1181_RS15520 at 53.240 kb on - strand at 53.240 kb on - strand at 53.243 kb on - strand at 53.302 kb on + strand at 53.303 kb on - strand at 53.365 kb on - strand at 54.606 kb on - strand at 54.614 kb on - strand at 54.614 kb on - strand at 54.614 kb on - strand at 54.704 kb on - strand at 54.704 kb on - strand at 54.857 kb on - strand, within HMPREF1181_RS15530 at 54.884 kb on - strand, within HMPREF1181_RS15530 at 54.934 kb on - strand, within HMPREF1181_RS15530 at 54.934 kb on - strand, within HMPREF1181_RS15530 at 55.057 kb on - strand, within HMPREF1181_RS15530 at 55.138 kb on - strand, within HMPREF1181_RS15530 at 55.138 kb on - strand, within HMPREF1181_RS15530 at 55.178 kb on - strand, within HMPREF1181_RS15530 at 55.193 kb on - strand, within HMPREF1181_RS15530 at 55.193 kb on - strand, within HMPREF1181_RS15530 at 55.193 kb on - strand, within HMPREF1181_RS15530 at 55.193 kb on - strand, within HMPREF1181_RS15530 at 55.407 kb on - strand, within HMPREF1181_RS15530 at 55.445 kb on - strand, within HMPREF1181_RS15530 at 55.445 kb on - strand, within HMPREF1181_RS15530 at 55.454 kb on - strand, within HMPREF1181_RS15530 at 55.546 kb on - strand, within HMPREF1181_RS15530 at 55.546 kb on - strand, within HMPREF1181_RS15530 at 55.578 kb on - strand, within HMPREF1181_RS15530 at 55.583 kb on - strand, within HMPREF1181_RS15530
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 52,690 + HMPREF1181_RS15520 0.44 +0.1 52,691 - HMPREF1181_RS15520 0.44 -1.3 52,692 + HMPREF1181_RS15520 0.44 +0.7 52,693 - HMPREF1181_RS15520 0.45 -0.3 52,795 + HMPREF1181_RS15520 0.53 -0.2 52,796 - HMPREF1181_RS15520 0.53 -0.0 52,840 + HMPREF1181_RS15520 0.57 -0.2 53,107 - HMPREF1181_RS15520 0.80 +0.4 53,123 + HMPREF1181_RS15520 0.81 -0.4 53,240 - +0.7 53,240 - -0.2 53,243 - +0.4 53,302 + +0.3 53,303 - +0.2 53,365 - -0.0 54,606 - +0.3 54,614 - +1.2 54,614 - +0.4 54,614 - +0.4 54,704 - -3.5 54,704 - -2.3 54,857 - HMPREF1181_RS15530 0.20 -2.1 54,884 - HMPREF1181_RS15530 0.22 +0.6 54,934 - HMPREF1181_RS15530 0.26 -4.1 54,934 - HMPREF1181_RS15530 0.26 -2.3 55,057 - HMPREF1181_RS15530 0.36 -3.9 55,138 - HMPREF1181_RS15530 0.43 -3.5 55,138 - HMPREF1181_RS15530 0.43 -2.4 55,178 - HMPREF1181_RS15530 0.46 -2.7 55,193 - HMPREF1181_RS15530 0.48 -3.4 55,193 - HMPREF1181_RS15530 0.48 -3.0 55,193 - HMPREF1181_RS15530 0.48 -1.8 55,193 - HMPREF1181_RS15530 0.48 -2.3 55,407 - HMPREF1181_RS15530 0.66 -1.6 55,445 - HMPREF1181_RS15530 0.69 -2.8 55,445 - HMPREF1181_RS15530 0.69 -2.8 55,454 - HMPREF1181_RS15530 0.69 -3.0 55,546 - HMPREF1181_RS15530 0.77 -0.7 55,546 - HMPREF1181_RS15530 0.77 -2.2 55,578 - HMPREF1181_RS15530 0.80 -2.3 55,583 - HMPREF1181_RS15530 0.80 -2.0
Or see this region's nucleotide sequence