Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS01435

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS01430 and HMPREF1181_RS01435 are separated by 102 nucleotidesHMPREF1181_RS01435 and HMPREF1181_RS01440 are separated by 281 nucleotides HMPREF1181_RS01430: HMPREF1181_RS01430 - TonB-dependent receptor, at 344,414 to 347,182 _RS01430 HMPREF1181_RS01435: HMPREF1181_RS01435 - metallophosphoesterase, at 347,285 to 348,217 _RS01435 HMPREF1181_RS01440: HMPREF1181_RS01440 - calcium/sodium antiporter, at 348,499 to 349,461 _RS01440 Position (kb) 347 348 349Strain fitness (log2 ratio) -1 0 1 2at 346.298 kb on + strand, within HMPREF1181_RS01430at 346.299 kb on - strand, within HMPREF1181_RS01430at 346.299 kb on - strand, within HMPREF1181_RS01430at 346.350 kb on - strand, within HMPREF1181_RS01430at 346.354 kb on + strand, within HMPREF1181_RS01430at 346.446 kb on - strand, within HMPREF1181_RS01430at 346.459 kb on - strand, within HMPREF1181_RS01430at 346.662 kb on + strand, within HMPREF1181_RS01430at 346.662 kb on + strand, within HMPREF1181_RS01430at 346.662 kb on + strand, within HMPREF1181_RS01430at 346.663 kb on - strand, within HMPREF1181_RS01430at 346.663 kb on - strand, within HMPREF1181_RS01430at 346.667 kb on - strand, within HMPREF1181_RS01430at 346.778 kb on + strand, within HMPREF1181_RS01430at 346.788 kb on - strand, within HMPREF1181_RS01430at 346.788 kb on - strand, within HMPREF1181_RS01430at 346.793 kb on + strand, within HMPREF1181_RS01430at 346.794 kb on - strand, within HMPREF1181_RS01430at 346.796 kb on - strand, within HMPREF1181_RS01430at 346.979 kb on + strandat 346.988 kb on + strandat 346.991 kb on + strandat 346.992 kb on - strandat 347.007 kb on - strandat 347.027 kb on + strandat 347.030 kb on - strandat 347.053 kb on + strandat 347.149 kb on - strandat 347.218 kb on - strandat 347.218 kb on - strandat 347.272 kb on + strandat 347.273 kb on - strandat 347.305 kb on - strandat 347.308 kb on - strandat 347.384 kb on + strand, within HMPREF1181_RS01435at 347.384 kb on + strand, within HMPREF1181_RS01435at 347.414 kb on + strand, within HMPREF1181_RS01435at 347.417 kb on + strand, within HMPREF1181_RS01435at 347.520 kb on + strand, within HMPREF1181_RS01435at 347.552 kb on - strand, within HMPREF1181_RS01435at 347.693 kb on + strand, within HMPREF1181_RS01435at 347.694 kb on - strand, within HMPREF1181_RS01435at 347.694 kb on - strand, within HMPREF1181_RS01435at 347.696 kb on - strand, within HMPREF1181_RS01435at 347.742 kb on + strand, within HMPREF1181_RS01435at 347.742 kb on + strand, within HMPREF1181_RS01435at 347.747 kb on - strand, within HMPREF1181_RS01435at 347.747 kb on - strand, within HMPREF1181_RS01435at 347.760 kb on + strand, within HMPREF1181_RS01435at 347.789 kb on + strand, within HMPREF1181_RS01435at 347.813 kb on + strand, within HMPREF1181_RS01435at 347.897 kb on + strand, within HMPREF1181_RS01435at 347.956 kb on + strand, within HMPREF1181_RS01435at 347.984 kb on + strand, within HMPREF1181_RS01435at 347.985 kb on - strand, within HMPREF1181_RS01435at 347.985 kb on - strand, within HMPREF1181_RS01435at 347.986 kb on + strand, within HMPREF1181_RS01435at 347.987 kb on - strand, within HMPREF1181_RS01435at 347.999 kb on - strand, within HMPREF1181_RS01435at 348.039 kb on + strand, within HMPREF1181_RS01435at 348.039 kb on + strand, within HMPREF1181_RS01435at 348.044 kb on + strand, within HMPREF1181_RS01435at 348.045 kb on - strand, within HMPREF1181_RS01435at 348.046 kb on + strand, within HMPREF1181_RS01435at 348.135 kb on + strandat 348.135 kb on + strandat 348.135 kb on + strandat 348.135 kb on + strandat 348.136 kb on - strandat 348.190 kb on - strandat 348.190 kb on - strandat 348.203 kb on - strandat 348.342 kb on + strandat 348.346 kb on + strandat 348.347 kb on - strandat 348.382 kb on + strandat 348.385 kb on - strandat 348.421 kb on + strandat 348.422 kb on - strandat 348.493 kb on + strandat 348.509 kb on + strandat 348.509 kb on + strandat 348.510 kb on - strandat 348.510 kb on - strandat 348.883 kb on - strand, within HMPREF1181_RS01440at 349.057 kb on - strand, within HMPREF1181_RS01440at 349.057 kb on - strand, within HMPREF1181_RS01440at 349.115 kb on + strand, within HMPREF1181_RS01440at 349.187 kb on + strand, within HMPREF1181_RS01440at 349.214 kb on + strand, within HMPREF1181_RS01440

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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346,298 + HMPREF1181_RS01430 0.68 +0.6
346,299 - HMPREF1181_RS01430 0.68 -0.5
346,299 - HMPREF1181_RS01430 0.68 -0.1
346,350 - HMPREF1181_RS01430 0.70 -0.9
346,354 + HMPREF1181_RS01430 0.70 -0.4
346,446 - HMPREF1181_RS01430 0.73 -0.1
346,459 - HMPREF1181_RS01430 0.74 +0.3
346,662 + HMPREF1181_RS01430 0.81 +0.1
346,662 + HMPREF1181_RS01430 0.81 -0.4
346,662 + HMPREF1181_RS01430 0.81 -0.3
346,663 - HMPREF1181_RS01430 0.81 -0.4
346,663 - HMPREF1181_RS01430 0.81 +0.2
346,667 - HMPREF1181_RS01430 0.81 -0.6
346,778 + HMPREF1181_RS01430 0.85 -0.1
346,788 - HMPREF1181_RS01430 0.86 +1.7
346,788 - HMPREF1181_RS01430 0.86 -0.2
346,793 + HMPREF1181_RS01430 0.86 -0.3
346,794 - HMPREF1181_RS01430 0.86 -0.4
346,796 - HMPREF1181_RS01430 0.86 -0.1
346,979 + -0.2
346,988 + -0.0
346,991 + +0.2
346,992 - +0.3
347,007 - -0.5
347,027 + -0.4
347,030 - +0.3
347,053 + -0.9
347,149 - +0.6
347,218 - +0.2
347,218 - +0.3
347,272 + -0.3
347,273 - +0.2
347,305 - +0.2
347,308 - +0.3
347,384 + HMPREF1181_RS01435 0.11 +0.1
347,384 + HMPREF1181_RS01435 0.11 +0.5
347,414 + HMPREF1181_RS01435 0.14 +0.6
347,417 + HMPREF1181_RS01435 0.14 +0.1
347,520 + HMPREF1181_RS01435 0.25 +0.1
347,552 - HMPREF1181_RS01435 0.29 -0.2
347,693 + HMPREF1181_RS01435 0.44 -0.0
347,694 - HMPREF1181_RS01435 0.44 -0.1
347,694 - HMPREF1181_RS01435 0.44 +0.3
347,696 - HMPREF1181_RS01435 0.44 +0.5
347,742 + HMPREF1181_RS01435 0.49 +0.1
347,742 + HMPREF1181_RS01435 0.49 -1.2
347,747 - HMPREF1181_RS01435 0.50 +0.1
347,747 - HMPREF1181_RS01435 0.50 -0.1
347,760 + HMPREF1181_RS01435 0.51 +0.4
347,789 + HMPREF1181_RS01435 0.54 -0.2
347,813 + HMPREF1181_RS01435 0.57 +0.1
347,897 + HMPREF1181_RS01435 0.66 +1.2
347,956 + HMPREF1181_RS01435 0.72 +0.7
347,984 + HMPREF1181_RS01435 0.75 +0.5
347,985 - HMPREF1181_RS01435 0.75 -0.1
347,985 - HMPREF1181_RS01435 0.75 -0.1
347,986 + HMPREF1181_RS01435 0.75 -0.0
347,987 - HMPREF1181_RS01435 0.75 -0.1
347,999 - HMPREF1181_RS01435 0.77 +0.0
348,039 + HMPREF1181_RS01435 0.81 -0.4
348,039 + HMPREF1181_RS01435 0.81 -0.3
348,044 + HMPREF1181_RS01435 0.81 -0.3
348,045 - HMPREF1181_RS01435 0.81 +1.3
348,046 + HMPREF1181_RS01435 0.82 -1.1
348,135 + -1.7
348,135 + +0.6
348,135 + +0.4
348,135 + +0.1
348,136 - -0.3
348,190 - -0.5
348,190 - +0.5
348,203 - -0.5
348,342 + -0.2
348,346 + -0.2
348,347 - +2.2
348,382 + -1.1
348,385 - -0.4
348,421 + +0.8
348,422 - -0.0
348,493 + +0.3
348,509 + -0.8
348,509 + +0.7
348,510 - -0.4
348,510 - -0.1
348,883 - HMPREF1181_RS01440 0.40 -0.4
349,057 - HMPREF1181_RS01440 0.58 -0.3
349,057 - HMPREF1181_RS01440 0.58 -0.3
349,115 + HMPREF1181_RS01440 0.64 -0.1
349,187 + HMPREF1181_RS01440 0.71 -0.5
349,214 + HMPREF1181_RS01440 0.74 -0.1

Or see this region's nucleotide sequence