Experiment: NAG 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS04435 and HMPREF1181_RS04440 are separated by 46 nucleotides HMPREF1181_RS04440 and HMPREF1181_RS04445 are separated by 49 nucleotides
HMPREF1181_RS04435: HMPREF1181_RS04435 - galactose mutarotase, at 123,010 to 124,107
_RS04435
HMPREF1181_RS04440: HMPREF1181_RS04440 - MFS transporter, at 124,154 to 125,464
_RS04440
HMPREF1181_RS04445: HMPREF1181_RS04445 - galactokinase, at 125,514 to 126,668
_RS04445
Position (kb) 124
125
126 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 123.224 kb on + strand, within HMPREF1181_RS04435 at 123.225 kb on - strand, within HMPREF1181_RS04435 at 123.233 kb on + strand, within HMPREF1181_RS04435 at 123.234 kb on - strand, within HMPREF1181_RS04435 at 123.236 kb on + strand, within HMPREF1181_RS04435 at 123.236 kb on + strand, within HMPREF1181_RS04435 at 123.311 kb on + strand, within HMPREF1181_RS04435 at 123.311 kb on + strand, within HMPREF1181_RS04435 at 123.312 kb on - strand, within HMPREF1181_RS04435 at 123.436 kb on + strand, within HMPREF1181_RS04435 at 123.438 kb on + strand, within HMPREF1181_RS04435 at 123.438 kb on + strand, within HMPREF1181_RS04435 at 123.476 kb on + strand, within HMPREF1181_RS04435 at 123.493 kb on + strand, within HMPREF1181_RS04435 at 123.525 kb on + strand, within HMPREF1181_RS04435 at 123.528 kb on - strand, within HMPREF1181_RS04435 at 123.532 kb on + strand, within HMPREF1181_RS04435 at 123.563 kb on + strand, within HMPREF1181_RS04435 at 123.600 kb on + strand, within HMPREF1181_RS04435 at 123.634 kb on - strand, within HMPREF1181_RS04435 at 123.659 kb on - strand, within HMPREF1181_RS04435 at 123.659 kb on - strand, within HMPREF1181_RS04435 at 123.663 kb on - strand, within HMPREF1181_RS04435 at 123.677 kb on + strand, within HMPREF1181_RS04435 at 123.715 kb on - strand, within HMPREF1181_RS04435 at 123.720 kb on + strand, within HMPREF1181_RS04435 at 123.809 kb on - strand, within HMPREF1181_RS04435 at 123.859 kb on - strand, within HMPREF1181_RS04435 at 123.859 kb on - strand, within HMPREF1181_RS04435 at 123.890 kb on + strand, within HMPREF1181_RS04435 at 123.892 kb on + strand, within HMPREF1181_RS04435 at 123.919 kb on + strand, within HMPREF1181_RS04435 at 123.986 kb on + strand, within HMPREF1181_RS04435 at 123.987 kb on - strand, within HMPREF1181_RS04435 at 124.076 kb on + strand at 124.129 kb on + strand at 124.308 kb on + strand, within HMPREF1181_RS04440 at 124.358 kb on - strand, within HMPREF1181_RS04440 at 124.376 kb on + strand, within HMPREF1181_RS04440 at 124.379 kb on - strand, within HMPREF1181_RS04440 at 124.402 kb on + strand, within HMPREF1181_RS04440 at 124.507 kb on - strand, within HMPREF1181_RS04440 at 124.507 kb on - strand, within HMPREF1181_RS04440 at 124.510 kb on + strand, within HMPREF1181_RS04440 at 124.513 kb on + strand, within HMPREF1181_RS04440 at 124.513 kb on + strand, within HMPREF1181_RS04440 at 124.638 kb on + strand, within HMPREF1181_RS04440 at 124.639 kb on - strand, within HMPREF1181_RS04440 at 124.688 kb on + strand, within HMPREF1181_RS04440 at 124.845 kb on + strand, within HMPREF1181_RS04440 at 124.852 kb on - strand, within HMPREF1181_RS04440 at 124.852 kb on - strand, within HMPREF1181_RS04440 at 124.914 kb on + strand, within HMPREF1181_RS04440 at 124.915 kb on - strand, within HMPREF1181_RS04440 at 124.915 kb on - strand, within HMPREF1181_RS04440 at 125.067 kb on + strand, within HMPREF1181_RS04440 at 125.180 kb on - strand, within HMPREF1181_RS04440 at 125.206 kb on + strand, within HMPREF1181_RS04440 at 125.443 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.469 kb on - strand at 125.476 kb on - strand at 125.478 kb on - strand at 125.481 kb on + strand at 125.511 kb on - strand at 125.521 kb on + strand at 125.521 kb on + strand at 125.522 kb on - strand at 125.527 kb on - strand at 125.530 kb on + strand at 125.530 kb on + strand at 125.577 kb on + strand at 125.577 kb on + strand at 125.577 kb on + strand at 125.578 kb on - strand at 125.597 kb on + strand at 125.702 kb on - strand, within HMPREF1181_RS04445 at 125.709 kb on + strand, within HMPREF1181_RS04445 at 125.730 kb on + strand, within HMPREF1181_RS04445 at 125.735 kb on - strand, within HMPREF1181_RS04445 at 125.746 kb on + strand, within HMPREF1181_RS04445 at 125.785 kb on - strand, within HMPREF1181_RS04445 at 125.785 kb on - strand, within HMPREF1181_RS04445 at 125.824 kb on + strand, within HMPREF1181_RS04445 at 125.830 kb on + strand, within HMPREF1181_RS04445 at 125.831 kb on - strand, within HMPREF1181_RS04445 at 125.831 kb on - strand, within HMPREF1181_RS04445 at 125.910 kb on + strand, within HMPREF1181_RS04445 at 125.911 kb on - strand, within HMPREF1181_RS04445 at 125.911 kb on - strand, within HMPREF1181_RS04445 at 125.997 kb on + strand, within HMPREF1181_RS04445 at 125.997 kb on + strand, within HMPREF1181_RS04445 at 125.998 kb on - strand, within HMPREF1181_RS04445 at 126.021 kb on - strand, within HMPREF1181_RS04445 at 126.096 kb on + strand, within HMPREF1181_RS04445 at 126.096 kb on + strand, within HMPREF1181_RS04445 at 126.097 kb on - strand, within HMPREF1181_RS04445 at 126.309 kb on - strand, within HMPREF1181_RS04445 at 126.309 kb on - strand, within HMPREF1181_RS04445 at 126.392 kb on - strand, within HMPREF1181_RS04445 at 126.434 kb on - strand, within HMPREF1181_RS04445 at 126.436 kb on - strand, within HMPREF1181_RS04445 at 126.442 kb on + strand, within HMPREF1181_RS04445
Per-strain Table
Position Strand Gene LocusTag Fraction NAG 10 mM (C) remove 123,224 + HMPREF1181_RS04435 0.19 -3.6 123,225 - HMPREF1181_RS04435 0.20 -1.1 123,233 + HMPREF1181_RS04435 0.20 -2.3 123,234 - HMPREF1181_RS04435 0.20 -1.3 123,236 + HMPREF1181_RS04435 0.21 -3.2 123,236 + HMPREF1181_RS04435 0.21 -2.9 123,311 + HMPREF1181_RS04435 0.27 -2.4 123,311 + HMPREF1181_RS04435 0.27 -2.1 123,312 - HMPREF1181_RS04435 0.28 -3.0 123,436 + HMPREF1181_RS04435 0.39 -0.2 123,438 + HMPREF1181_RS04435 0.39 -0.5 123,438 + HMPREF1181_RS04435 0.39 +0.5 123,476 + HMPREF1181_RS04435 0.42 -0.9 123,493 + HMPREF1181_RS04435 0.44 -0.6 123,525 + HMPREF1181_RS04435 0.47 -0.0 123,528 - HMPREF1181_RS04435 0.47 -3.0 123,532 + HMPREF1181_RS04435 0.48 +0.1 123,563 + HMPREF1181_RS04435 0.50 +0.7 123,600 + HMPREF1181_RS04435 0.54 +0.1 123,634 - HMPREF1181_RS04435 0.57 -2.9 123,659 - HMPREF1181_RS04435 0.59 -1.7 123,659 - HMPREF1181_RS04435 0.59 -5.1 123,663 - HMPREF1181_RS04435 0.59 -5.7 123,677 + HMPREF1181_RS04435 0.61 -1.0 123,715 - HMPREF1181_RS04435 0.64 -0.9 123,720 + HMPREF1181_RS04435 0.65 -1.7 123,809 - HMPREF1181_RS04435 0.73 -3.7 123,859 - HMPREF1181_RS04435 0.77 -4.0 123,859 - HMPREF1181_RS04435 0.77 -1.2 123,890 + HMPREF1181_RS04435 0.80 -1.1 123,892 + HMPREF1181_RS04435 0.80 -0.4 123,919 + HMPREF1181_RS04435 0.83 -1.4 123,986 + HMPREF1181_RS04435 0.89 -0.6 123,987 - HMPREF1181_RS04435 0.89 -2.1 124,076 + -1.0 124,129 + +0.1 124,308 + HMPREF1181_RS04440 0.12 -2.1 124,358 - HMPREF1181_RS04440 0.16 -2.4 124,376 + HMPREF1181_RS04440 0.17 -1.3 124,379 - HMPREF1181_RS04440 0.17 -4.7 124,402 + HMPREF1181_RS04440 0.19 -1.4 124,507 - HMPREF1181_RS04440 0.27 -4.2 124,507 - HMPREF1181_RS04440 0.27 -1.1 124,510 + HMPREF1181_RS04440 0.27 -3.1 124,513 + HMPREF1181_RS04440 0.27 -0.9 124,513 + HMPREF1181_RS04440 0.27 -0.6 124,638 + HMPREF1181_RS04440 0.37 -1.6 124,639 - HMPREF1181_RS04440 0.37 -4.0 124,688 + HMPREF1181_RS04440 0.41 -2.3 124,845 + HMPREF1181_RS04440 0.53 -0.6 124,852 - HMPREF1181_RS04440 0.53 -3.5 124,852 - HMPREF1181_RS04440 0.53 -4.9 124,914 + HMPREF1181_RS04440 0.58 -1.9 124,915 - HMPREF1181_RS04440 0.58 -2.3 124,915 - HMPREF1181_RS04440 0.58 -1.4 125,067 + HMPREF1181_RS04440 0.70 -0.9 125,180 - HMPREF1181_RS04440 0.78 -4.0 125,206 + HMPREF1181_RS04440 0.80 -3.1 125,443 + -0.3 125,468 + -0.0 125,468 + -0.5 125,468 + +0.1 125,469 - -1.3 125,476 - -1.8 125,478 - -0.1 125,481 + -0.3 125,511 - -1.2 125,521 + -0.7 125,521 + -0.2 125,522 - -2.5 125,527 - -2.1 125,530 + +0.7 125,530 + +0.8 125,577 + +1.1 125,577 + +2.3 125,577 + -0.3 125,578 - -1.9 125,597 + +1.0 125,702 - HMPREF1181_RS04445 0.16 -0.7 125,709 + HMPREF1181_RS04445 0.17 +0.2 125,730 + HMPREF1181_RS04445 0.19 -0.5 125,735 - HMPREF1181_RS04445 0.19 -0.6 125,746 + HMPREF1181_RS04445 0.20 +0.8 125,785 - HMPREF1181_RS04445 0.23 -0.3 125,785 - HMPREF1181_RS04445 0.23 +0.2 125,824 + HMPREF1181_RS04445 0.27 +0.4 125,830 + HMPREF1181_RS04445 0.27 +2.0 125,831 - HMPREF1181_RS04445 0.27 -0.2 125,831 - HMPREF1181_RS04445 0.27 -0.2 125,910 + HMPREF1181_RS04445 0.34 +0.7 125,911 - HMPREF1181_RS04445 0.34 +0.7 125,911 - HMPREF1181_RS04445 0.34 +0.7 125,997 + HMPREF1181_RS04445 0.42 -0.7 125,997 + HMPREF1181_RS04445 0.42 +0.0 125,998 - HMPREF1181_RS04445 0.42 +0.7 126,021 - HMPREF1181_RS04445 0.44 +0.1 126,096 + HMPREF1181_RS04445 0.50 +0.8 126,096 + HMPREF1181_RS04445 0.50 +0.3 126,097 - HMPREF1181_RS04445 0.50 -0.8 126,309 - HMPREF1181_RS04445 0.69 +0.2 126,309 - HMPREF1181_RS04445 0.69 +1.2 126,392 - HMPREF1181_RS04445 0.76 +1.1 126,434 - HMPREF1181_RS04445 0.80 +0.4 126,436 - HMPREF1181_RS04445 0.80 -0.9 126,442 + HMPREF1181_RS04445 0.80 +0.4
Or see this region's nucleotide sequence