Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02366

Experiment: Sew9

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_02364 and OHPLBJKB_02365 are separated by 13 nucleotidesOHPLBJKB_02365 and OHPLBJKB_02366 overlap by 4 nucleotidesOHPLBJKB_02366 and OHPLBJKB_02367 overlap by 4 nucleotides OHPLBJKB_02364: OHPLBJKB_02364 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 2,473,291 to 2,474,373 _02364 OHPLBJKB_02365: OHPLBJKB_02365 - Beta-phosphoglucomutase, at 2,474,387 to 2,475,046 _02365 OHPLBJKB_02366: OHPLBJKB_02366 - Kojibiose phosphorylase, at 2,475,043 to 2,477,310 _02366 OHPLBJKB_02367: OHPLBJKB_02367 - Myo-inositol 2-dehydrogenase, at 2,477,307 to 2,478,362 _02367 Position (kb) 2475 2476 2477 2478Strain fitness (log2 ratio) -2 -1 0 1 2at 2474.112 kb on - strand, within OHPLBJKB_02364at 2474.120 kb on + strand, within OHPLBJKB_02364at 2474.121 kb on - strand, within OHPLBJKB_02364at 2474.140 kb on + strand, within OHPLBJKB_02364at 2474.140 kb on + strand, within OHPLBJKB_02364at 2474.141 kb on - strand, within OHPLBJKB_02364at 2474.336 kb on + strandat 2474.349 kb on + strandat 2474.350 kb on - strandat 2474.390 kb on + strandat 2474.390 kb on + strandat 2474.391 kb on - strandat 2474.546 kb on - strand, within OHPLBJKB_02365at 2474.618 kb on - strand, within OHPLBJKB_02365at 2474.802 kb on + strand, within OHPLBJKB_02365at 2474.802 kb on + strand, within OHPLBJKB_02365at 2474.803 kb on - strand, within OHPLBJKB_02365at 2475.008 kb on + strandat 2475.008 kb on + strandat 2475.008 kb on + strandat 2475.009 kb on - strandat 2475.009 kb on - strandat 2475.091 kb on - strandat 2475.132 kb on + strandat 2475.132 kb on + strandat 2475.133 kb on - strandat 2475.133 kb on - strandat 2475.133 kb on - strandat 2475.133 kb on - strandat 2475.375 kb on + strand, within OHPLBJKB_02366at 2475.376 kb on - strand, within OHPLBJKB_02366at 2475.376 kb on - strand, within OHPLBJKB_02366at 2475.376 kb on - strand, within OHPLBJKB_02366at 2475.478 kb on - strand, within OHPLBJKB_02366at 2475.478 kb on - strand, within OHPLBJKB_02366at 2475.482 kb on - strand, within OHPLBJKB_02366at 2475.498 kb on + strand, within OHPLBJKB_02366at 2475.566 kb on + strand, within OHPLBJKB_02366at 2475.566 kb on + strand, within OHPLBJKB_02366at 2475.566 kb on + strand, within OHPLBJKB_02366at 2475.566 kb on + strand, within OHPLBJKB_02366at 2475.567 kb on - strand, within OHPLBJKB_02366at 2475.567 kb on - strand, within OHPLBJKB_02366at 2475.567 kb on - strand, within OHPLBJKB_02366at 2475.567 kb on - strand, within OHPLBJKB_02366at 2475.567 kb on - strand, within OHPLBJKB_02366at 2475.640 kb on + strand, within OHPLBJKB_02366at 2475.641 kb on - strand, within OHPLBJKB_02366at 2475.641 kb on - strand, within OHPLBJKB_02366at 2475.751 kb on + strand, within OHPLBJKB_02366at 2475.751 kb on + strand, within OHPLBJKB_02366at 2475.751 kb on + strand, within OHPLBJKB_02366at 2475.751 kb on + strand, within OHPLBJKB_02366at 2475.752 kb on - strand, within OHPLBJKB_02366at 2475.752 kb on - strand, within OHPLBJKB_02366at 2475.752 kb on - strand, within OHPLBJKB_02366at 2475.854 kb on + strand, within OHPLBJKB_02366at 2475.854 kb on + strand, within OHPLBJKB_02366at 2475.855 kb on - strand, within OHPLBJKB_02366at 2475.855 kb on - strand, within OHPLBJKB_02366at 2475.855 kb on - strand, within OHPLBJKB_02366at 2475.855 kb on - strand, within OHPLBJKB_02366at 2475.863 kb on + strand, within OHPLBJKB_02366at 2475.863 kb on + strand, within OHPLBJKB_02366at 2475.863 kb on + strand, within OHPLBJKB_02366at 2475.863 kb on + strand, within OHPLBJKB_02366at 2475.864 kb on - strand, within OHPLBJKB_02366at 2475.864 kb on - strand, within OHPLBJKB_02366at 2475.864 kb on - strand, within OHPLBJKB_02366at 2475.870 kb on + strand, within OHPLBJKB_02366at 2475.870 kb on + strand, within OHPLBJKB_02366at 2475.873 kb on + strand, within OHPLBJKB_02366at 2475.906 kb on + strand, within OHPLBJKB_02366at 2476.300 kb on + strand, within OHPLBJKB_02366at 2476.421 kb on - strand, within OHPLBJKB_02366at 2476.521 kb on - strand, within OHPLBJKB_02366at 2476.662 kb on + strand, within OHPLBJKB_02366at 2476.662 kb on + strand, within OHPLBJKB_02366at 2476.663 kb on - strand, within OHPLBJKB_02366at 2476.663 kb on - strand, within OHPLBJKB_02366at 2476.694 kb on + strand, within OHPLBJKB_02366at 2476.694 kb on + strand, within OHPLBJKB_02366at 2476.695 kb on - strand, within OHPLBJKB_02366at 2476.695 kb on - strand, within OHPLBJKB_02366at 2476.695 kb on - strand, within OHPLBJKB_02366at 2476.722 kb on + strand, within OHPLBJKB_02366at 2476.723 kb on - strand, within OHPLBJKB_02366at 2476.769 kb on + strand, within OHPLBJKB_02366at 2476.769 kb on + strand, within OHPLBJKB_02366at 2476.769 kb on + strand, within OHPLBJKB_02366at 2476.770 kb on - strand, within OHPLBJKB_02366at 2476.899 kb on + strand, within OHPLBJKB_02366at 2476.899 kb on + strand, within OHPLBJKB_02366at 2476.899 kb on + strand, within OHPLBJKB_02366at 2476.900 kb on - strand, within OHPLBJKB_02366at 2476.967 kb on + strand, within OHPLBJKB_02366at 2476.968 kb on - strand, within OHPLBJKB_02366at 2477.077 kb on + strand, within OHPLBJKB_02366at 2477.150 kb on + strandat 2477.165 kb on + strandat 2477.165 kb on + strandat 2477.165 kb on + strandat 2477.165 kb on + strandat 2477.166 kb on - strandat 2477.189 kb on + strandat 2477.190 kb on - strandat 2477.223 kb on - strandat 2477.252 kb on + strandat 2477.252 kb on + strandat 2477.252 kb on + strandat 2477.252 kb on + strandat 2477.252 kb on + strandat 2477.252 kb on + strandat 2477.252 kb on + strandat 2477.252 kb on + strandat 2477.252 kb on + strandat 2477.252 kb on + strandat 2477.252 kb on + strandat 2477.253 kb on - strandat 2477.253 kb on - strandat 2477.253 kb on - strandat 2477.253 kb on - strandat 2477.253 kb on - strandat 2477.253 kb on - strandat 2477.265 kb on + strandat 2477.265 kb on + strandat 2477.310 kb on + strandat 2477.311 kb on - strandat 2477.345 kb on - strandat 2477.374 kb on + strandat 2477.374 kb on + strandat 2477.375 kb on - strandat 2477.416 kb on - strand, within OHPLBJKB_02367at 2477.416 kb on - strand, within OHPLBJKB_02367at 2477.416 kb on - strand, within OHPLBJKB_02367at 2477.490 kb on + strand, within OHPLBJKB_02367at 2477.512 kb on + strand, within OHPLBJKB_02367at 2477.512 kb on + strand, within OHPLBJKB_02367at 2477.513 kb on - strand, within OHPLBJKB_02367at 2477.516 kb on + strand, within OHPLBJKB_02367at 2477.516 kb on + strand, within OHPLBJKB_02367at 2477.516 kb on + strand, within OHPLBJKB_02367at 2477.516 kb on + strand, within OHPLBJKB_02367at 2477.516 kb on + strand, within OHPLBJKB_02367at 2477.517 kb on - strand, within OHPLBJKB_02367at 2477.517 kb on - strand, within OHPLBJKB_02367at 2477.517 kb on - strand, within OHPLBJKB_02367at 2477.671 kb on + strand, within OHPLBJKB_02367at 2477.671 kb on + strand, within OHPLBJKB_02367at 2477.671 kb on + strand, within OHPLBJKB_02367at 2477.672 kb on - strand, within OHPLBJKB_02367at 2477.672 kb on - strand, within OHPLBJKB_02367at 2477.735 kb on + strand, within OHPLBJKB_02367at 2477.776 kb on + strand, within OHPLBJKB_02367at 2477.776 kb on + strand, within OHPLBJKB_02367at 2477.776 kb on + strand, within OHPLBJKB_02367at 2477.777 kb on - strand, within OHPLBJKB_02367at 2477.777 kb on - strand, within OHPLBJKB_02367at 2477.777 kb on - strand, within OHPLBJKB_02367at 2477.795 kb on + strand, within OHPLBJKB_02367at 2477.796 kb on - strand, within OHPLBJKB_02367at 2477.796 kb on - strand, within OHPLBJKB_02367at 2477.796 kb on - strand, within OHPLBJKB_02367at 2477.902 kb on + strand, within OHPLBJKB_02367at 2477.902 kb on + strand, within OHPLBJKB_02367at 2477.902 kb on + strand, within OHPLBJKB_02367at 2477.903 kb on - strand, within OHPLBJKB_02367at 2477.903 kb on - strand, within OHPLBJKB_02367at 2478.099 kb on - strand, within OHPLBJKB_02367at 2478.120 kb on - strand, within OHPLBJKB_02367at 2478.278 kb on - strandat 2478.280 kb on + strandat 2478.281 kb on - strandat 2478.281 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sew9
remove
2,474,112 - OHPLBJKB_02364 0.76 +0.2
2,474,120 + OHPLBJKB_02364 0.77 +0.1
2,474,121 - OHPLBJKB_02364 0.77 -0.3
2,474,140 + OHPLBJKB_02364 0.78 -0.2
2,474,140 + OHPLBJKB_02364 0.78 -0.8
2,474,141 - OHPLBJKB_02364 0.78 +0.1
2,474,336 + +0.7
2,474,349 + +0.1
2,474,350 - -0.5
2,474,390 + -0.6
2,474,390 + +0.9
2,474,391 - -0.3
2,474,546 - OHPLBJKB_02365 0.24 +0.3
2,474,618 - OHPLBJKB_02365 0.35 -1.1
2,474,802 + OHPLBJKB_02365 0.63 -0.9
2,474,802 + OHPLBJKB_02365 0.63 -0.5
2,474,803 - OHPLBJKB_02365 0.63 +0.0
2,475,008 + +0.6
2,475,008 + +1.0
2,475,008 + -1.3
2,475,009 - -1.4
2,475,009 - +0.6
2,475,091 - -0.9
2,475,132 + +1.0
2,475,132 + -0.7
2,475,133 - -0.3
2,475,133 - +1.5
2,475,133 - +0.7
2,475,133 - -0.9
2,475,375 + OHPLBJKB_02366 0.15 +0.1
2,475,376 - OHPLBJKB_02366 0.15 +2.2
2,475,376 - OHPLBJKB_02366 0.15 +1.1
2,475,376 - OHPLBJKB_02366 0.15 -0.4
2,475,478 - OHPLBJKB_02366 0.19 -1.7
2,475,478 - OHPLBJKB_02366 0.19 +0.1
2,475,482 - OHPLBJKB_02366 0.19 -1.1
2,475,498 + OHPLBJKB_02366 0.20 -0.7
2,475,566 + OHPLBJKB_02366 0.23 +1.1
2,475,566 + OHPLBJKB_02366 0.23 +0.7
2,475,566 + OHPLBJKB_02366 0.23 +0.5
2,475,566 + OHPLBJKB_02366 0.23 +0.3
2,475,567 - OHPLBJKB_02366 0.23 -0.9
2,475,567 - OHPLBJKB_02366 0.23 -1.3
2,475,567 - OHPLBJKB_02366 0.23 -0.7
2,475,567 - OHPLBJKB_02366 0.23 +1.5
2,475,567 - OHPLBJKB_02366 0.23 -0.3
2,475,640 + OHPLBJKB_02366 0.26 -1.1
2,475,641 - OHPLBJKB_02366 0.26 +0.6
2,475,641 - OHPLBJKB_02366 0.26 -0.2
2,475,751 + OHPLBJKB_02366 0.31 +0.9
2,475,751 + OHPLBJKB_02366 0.31 +0.3
2,475,751 + OHPLBJKB_02366 0.31 -0.6
2,475,751 + OHPLBJKB_02366 0.31 +0.8
2,475,752 - OHPLBJKB_02366 0.31 -1.8
2,475,752 - OHPLBJKB_02366 0.31 +0.1
2,475,752 - OHPLBJKB_02366 0.31 -1.3
2,475,854 + OHPLBJKB_02366 0.36 -0.2
2,475,854 + OHPLBJKB_02366 0.36 -1.3
2,475,855 - OHPLBJKB_02366 0.36 +0.7
2,475,855 - OHPLBJKB_02366 0.36 +0.2
2,475,855 - OHPLBJKB_02366 0.36 +0.1
2,475,855 - OHPLBJKB_02366 0.36 -0.0
2,475,863 + OHPLBJKB_02366 0.36 -0.5
2,475,863 + OHPLBJKB_02366 0.36 +0.2
2,475,863 + OHPLBJKB_02366 0.36 +0.2
2,475,863 + OHPLBJKB_02366 0.36 -2.3
2,475,864 - OHPLBJKB_02366 0.36 +0.7
2,475,864 - OHPLBJKB_02366 0.36 +0.6
2,475,864 - OHPLBJKB_02366 0.36 +2.0
2,475,870 + OHPLBJKB_02366 0.36 +0.1
2,475,870 + OHPLBJKB_02366 0.36 -1.7
2,475,873 + OHPLBJKB_02366 0.37 -1.2
2,475,906 + OHPLBJKB_02366 0.38 +1.1
2,476,300 + OHPLBJKB_02366 0.55 +1.2
2,476,421 - OHPLBJKB_02366 0.61 +0.9
2,476,521 - OHPLBJKB_02366 0.65 -0.1
2,476,662 + OHPLBJKB_02366 0.71 -0.1
2,476,662 + OHPLBJKB_02366 0.71 -0.2
2,476,663 - OHPLBJKB_02366 0.71 -1.3
2,476,663 - OHPLBJKB_02366 0.71 +0.7
2,476,694 + OHPLBJKB_02366 0.73 +0.8
2,476,694 + OHPLBJKB_02366 0.73 +0.3
2,476,695 - OHPLBJKB_02366 0.73 +1.1
2,476,695 - OHPLBJKB_02366 0.73 +0.2
2,476,695 - OHPLBJKB_02366 0.73 +0.1
2,476,722 + OHPLBJKB_02366 0.74 -0.9
2,476,723 - OHPLBJKB_02366 0.74 -0.7
2,476,769 + OHPLBJKB_02366 0.76 -0.5
2,476,769 + OHPLBJKB_02366 0.76 +0.6
2,476,769 + OHPLBJKB_02366 0.76 -0.3
2,476,770 - OHPLBJKB_02366 0.76 +0.5
2,476,899 + OHPLBJKB_02366 0.82 -1.0
2,476,899 + OHPLBJKB_02366 0.82 -0.5
2,476,899 + OHPLBJKB_02366 0.82 +0.8
2,476,900 - OHPLBJKB_02366 0.82 +0.4
2,476,967 + OHPLBJKB_02366 0.85 +0.4
2,476,968 - OHPLBJKB_02366 0.85 +0.1
2,477,077 + OHPLBJKB_02366 0.90 +0.1
2,477,150 + +0.4
2,477,165 + +0.5
2,477,165 + -0.5
2,477,165 + +0.1
2,477,165 + +0.6
2,477,166 - +0.7
2,477,189 + -1.5
2,477,190 - -0.1
2,477,223 - +0.7
2,477,252 + -1.2
2,477,252 + +2.5
2,477,252 + +0.6
2,477,252 + -0.7
2,477,252 + +0.2
2,477,252 + +0.6
2,477,252 + -0.9
2,477,252 + +1.3
2,477,252 + -0.0
2,477,252 + +0.7
2,477,252 + -1.1
2,477,253 - -1.0
2,477,253 - -0.5
2,477,253 - -0.4
2,477,253 - +0.8
2,477,253 - +0.3
2,477,253 - +0.2
2,477,265 + +0.6
2,477,265 + -2.5
2,477,310 + +0.5
2,477,311 - +1.1
2,477,345 - -1.9
2,477,374 + -0.3
2,477,374 + +0.9
2,477,375 - +0.3
2,477,416 - OHPLBJKB_02367 0.10 +0.7
2,477,416 - OHPLBJKB_02367 0.10 +1.1
2,477,416 - OHPLBJKB_02367 0.10 +1.1
2,477,490 + OHPLBJKB_02367 0.17 +0.3
2,477,512 + OHPLBJKB_02367 0.19 -0.9
2,477,512 + OHPLBJKB_02367 0.19 -0.1
2,477,513 - OHPLBJKB_02367 0.20 +0.9
2,477,516 + OHPLBJKB_02367 0.20 -0.1
2,477,516 + OHPLBJKB_02367 0.20 -1.9
2,477,516 + OHPLBJKB_02367 0.20 +1.2
2,477,516 + OHPLBJKB_02367 0.20 +0.8
2,477,516 + OHPLBJKB_02367 0.20 +0.2
2,477,517 - OHPLBJKB_02367 0.20 +0.2
2,477,517 - OHPLBJKB_02367 0.20 -0.3
2,477,517 - OHPLBJKB_02367 0.20 +0.3
2,477,671 + OHPLBJKB_02367 0.34 +0.8
2,477,671 + OHPLBJKB_02367 0.34 -0.5
2,477,671 + OHPLBJKB_02367 0.34 -0.1
2,477,672 - OHPLBJKB_02367 0.35 -0.7
2,477,672 - OHPLBJKB_02367 0.35 -0.1
2,477,735 + OHPLBJKB_02367 0.41 +0.1
2,477,776 + OHPLBJKB_02367 0.44 -0.4
2,477,776 + OHPLBJKB_02367 0.44 -1.1
2,477,776 + OHPLBJKB_02367 0.44 -0.2
2,477,777 - OHPLBJKB_02367 0.45 +0.7
2,477,777 - OHPLBJKB_02367 0.45 +0.5
2,477,777 - OHPLBJKB_02367 0.45 +0.1
2,477,795 + OHPLBJKB_02367 0.46 +0.5
2,477,796 - OHPLBJKB_02367 0.46 +0.1
2,477,796 - OHPLBJKB_02367 0.46 -0.0
2,477,796 - OHPLBJKB_02367 0.46 -0.5
2,477,902 + OHPLBJKB_02367 0.56 +1.1
2,477,902 + OHPLBJKB_02367 0.56 +1.0
2,477,902 + OHPLBJKB_02367 0.56 -0.4
2,477,903 - OHPLBJKB_02367 0.56 -1.6
2,477,903 - OHPLBJKB_02367 0.56 -0.2
2,478,099 - OHPLBJKB_02367 0.75 +0.3
2,478,120 - OHPLBJKB_02367 0.77 +0.4
2,478,278 - -0.2
2,478,280 + +1.8
2,478,281 - -0.3
2,478,281 - +0.7

Or see this region's nucleotide sequence