Experiment: Sew9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02327 and OHPLBJKB_02328 are separated by 171 nucleotides OHPLBJKB_02328 and OHPLBJKB_02329 are separated by 7 nucleotides OHPLBJKB_02329 and OHPLBJKB_02330 overlap by 4 nucleotides
OHPLBJKB_02327: OHPLBJKB_02327 - Transcriptional activator FeaR, at 2,432,169 to 2,433,074
_02327
OHPLBJKB_02328: OHPLBJKB_02328 - hypothetical protein, at 2,433,246 to 2,433,572
_02328
OHPLBJKB_02329: OHPLBJKB_02329 - hypothetical protein, at 2,433,580 to 2,433,765
_02329
OHPLBJKB_02330: OHPLBJKB_02330 - hypothetical protein, at 2,433,762 to 2,436,401
_02330
Position (kb)
2433
2434 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2432.357 kb on - strand, within OHPLBJKB_02327 at 2432.382 kb on + strand, within OHPLBJKB_02327 at 2432.459 kb on + strand, within OHPLBJKB_02327 at 2432.459 kb on + strand, within OHPLBJKB_02327 at 2432.459 kb on + strand, within OHPLBJKB_02327 at 2432.460 kb on - strand, within OHPLBJKB_02327 at 2432.460 kb on - strand, within OHPLBJKB_02327 at 2432.510 kb on + strand, within OHPLBJKB_02327 at 2432.554 kb on - strand, within OHPLBJKB_02327 at 2432.554 kb on - strand, within OHPLBJKB_02327 at 2432.603 kb on - strand, within OHPLBJKB_02327 at 2432.775 kb on - strand, within OHPLBJKB_02327 at 2432.810 kb on - strand, within OHPLBJKB_02327 at 2432.848 kb on + strand, within OHPLBJKB_02327 at 2432.848 kb on + strand, within OHPLBJKB_02327 at 2432.852 kb on + strand, within OHPLBJKB_02327 at 2432.852 kb on + strand, within OHPLBJKB_02327 at 2432.852 kb on + strand, within OHPLBJKB_02327 at 2432.852 kb on + strand, within OHPLBJKB_02327 at 2432.853 kb on - strand, within OHPLBJKB_02327 at 2432.853 kb on - strand, within OHPLBJKB_02327 at 2432.853 kb on - strand, within OHPLBJKB_02327 at 2432.853 kb on - strand, within OHPLBJKB_02327 at 2432.853 kb on - strand, within OHPLBJKB_02327 at 2432.898 kb on + strand, within OHPLBJKB_02327 at 2432.899 kb on - strand, within OHPLBJKB_02327 at 2432.900 kb on + strand, within OHPLBJKB_02327 at 2432.900 kb on + strand, within OHPLBJKB_02327 at 2432.906 kb on + strand, within OHPLBJKB_02327 at 2433.023 kb on + strand at 2433.024 kb on - strand at 2433.134 kb on + strand at 2433.195 kb on + strand at 2433.267 kb on - strand at 2433.273 kb on + strand at 2433.283 kb on - strand, within OHPLBJKB_02328 at 2433.286 kb on + strand, within OHPLBJKB_02328 at 2433.287 kb on - strand, within OHPLBJKB_02328 at 2433.516 kb on + strand, within OHPLBJKB_02328 at 2433.516 kb on + strand, within OHPLBJKB_02328 at 2433.517 kb on - strand, within OHPLBJKB_02328 at 2433.559 kb on - strand at 2433.559 kb on - strand at 2433.667 kb on - strand, within OHPLBJKB_02329 at 2433.667 kb on - strand, within OHPLBJKB_02329 at 2433.672 kb on + strand, within OHPLBJKB_02329 at 2433.687 kb on + strand, within OHPLBJKB_02329 at 2433.687 kb on + strand, within OHPLBJKB_02329 at 2433.687 kb on + strand, within OHPLBJKB_02329 at 2433.688 kb on - strand, within OHPLBJKB_02329 at 2433.688 kb on - strand, within OHPLBJKB_02329 at 2433.688 kb on - strand, within OHPLBJKB_02329 at 2433.715 kb on - strand, within OHPLBJKB_02329 at 2433.729 kb on + strand, within OHPLBJKB_02329 at 2433.730 kb on - strand, within OHPLBJKB_02329 at 2433.858 kb on + strand at 2433.859 kb on - strand at 2433.882 kb on - strand at 2433.882 kb on - strand at 2433.898 kb on + strand at 2433.902 kb on + strand at 2433.903 kb on - strand at 2433.903 kb on - strand at 2433.903 kb on - strand at 2433.924 kb on - strand at 2433.924 kb on - strand at 2433.941 kb on + strand at 2434.022 kb on - strand at 2434.022 kb on - strand at 2434.022 kb on - strand at 2434.181 kb on + strand, within OHPLBJKB_02330 at 2434.181 kb on + strand, within OHPLBJKB_02330 at 2434.182 kb on - strand, within OHPLBJKB_02330 at 2434.247 kb on + strand, within OHPLBJKB_02330 at 2434.283 kb on + strand, within OHPLBJKB_02330 at 2434.287 kb on + strand, within OHPLBJKB_02330 at 2434.288 kb on - strand, within OHPLBJKB_02330 at 2434.288 kb on - strand, within OHPLBJKB_02330 at 2434.288 kb on - strand, within OHPLBJKB_02330 at 2434.288 kb on - strand, within OHPLBJKB_02330 at 2434.302 kb on + strand, within OHPLBJKB_02330 at 2434.302 kb on + strand, within OHPLBJKB_02330 at 2434.302 kb on + strand, within OHPLBJKB_02330 at 2434.395 kb on - strand, within OHPLBJKB_02330
Per-strain Table
Position Strand Gene LocusTag Fraction Sew9 remove 2,432,357 - OHPLBJKB_02327 0.21 -1.0 2,432,382 + OHPLBJKB_02327 0.24 -0.9 2,432,459 + OHPLBJKB_02327 0.32 +1.6 2,432,459 + OHPLBJKB_02327 0.32 +0.5 2,432,459 + OHPLBJKB_02327 0.32 -0.2 2,432,460 - OHPLBJKB_02327 0.32 +0.3 2,432,460 - OHPLBJKB_02327 0.32 -0.5 2,432,510 + OHPLBJKB_02327 0.38 +0.3 2,432,554 - OHPLBJKB_02327 0.42 +0.9 2,432,554 - OHPLBJKB_02327 0.42 +0.2 2,432,603 - OHPLBJKB_02327 0.48 -0.4 2,432,775 - OHPLBJKB_02327 0.67 +0.6 2,432,810 - OHPLBJKB_02327 0.71 +0.6 2,432,848 + OHPLBJKB_02327 0.75 -0.3 2,432,848 + OHPLBJKB_02327 0.75 +1.8 2,432,852 + OHPLBJKB_02327 0.75 -0.4 2,432,852 + OHPLBJKB_02327 0.75 +0.9 2,432,852 + OHPLBJKB_02327 0.75 +0.1 2,432,852 + OHPLBJKB_02327 0.75 -0.2 2,432,853 - OHPLBJKB_02327 0.75 +0.1 2,432,853 - OHPLBJKB_02327 0.75 -1.1 2,432,853 - OHPLBJKB_02327 0.75 +0.2 2,432,853 - OHPLBJKB_02327 0.75 -0.5 2,432,853 - OHPLBJKB_02327 0.75 +0.5 2,432,898 + OHPLBJKB_02327 0.80 +0.8 2,432,899 - OHPLBJKB_02327 0.81 +0.6 2,432,900 + OHPLBJKB_02327 0.81 -0.4 2,432,900 + OHPLBJKB_02327 0.81 -0.0 2,432,906 + OHPLBJKB_02327 0.81 +0.1 2,433,023 + +0.7 2,433,024 - +0.3 2,433,134 + -2.6 2,433,195 + +0.7 2,433,267 - +0.2 2,433,273 + -1.0 2,433,283 - OHPLBJKB_02328 0.11 +0.2 2,433,286 + OHPLBJKB_02328 0.12 +0.4 2,433,287 - OHPLBJKB_02328 0.13 +0.1 2,433,516 + OHPLBJKB_02328 0.83 -1.5 2,433,516 + OHPLBJKB_02328 0.83 -0.3 2,433,517 - OHPLBJKB_02328 0.83 +0.3 2,433,559 - +0.1 2,433,559 - -0.6 2,433,667 - OHPLBJKB_02329 0.47 -1.0 2,433,667 - OHPLBJKB_02329 0.47 +0.2 2,433,672 + OHPLBJKB_02329 0.49 -0.3 2,433,687 + OHPLBJKB_02329 0.58 -0.8 2,433,687 + OHPLBJKB_02329 0.58 +0.6 2,433,687 + OHPLBJKB_02329 0.58 +0.8 2,433,688 - OHPLBJKB_02329 0.58 +0.3 2,433,688 - OHPLBJKB_02329 0.58 -0.5 2,433,688 - OHPLBJKB_02329 0.58 -0.7 2,433,715 - OHPLBJKB_02329 0.73 -0.1 2,433,729 + OHPLBJKB_02329 0.80 +1.1 2,433,730 - OHPLBJKB_02329 0.81 -0.5 2,433,858 + +0.4 2,433,859 - +0.1 2,433,882 - -0.3 2,433,882 - -1.6 2,433,898 + +0.6 2,433,902 + -0.1 2,433,903 - -0.5 2,433,903 - +0.2 2,433,903 - -0.9 2,433,924 - +0.9 2,433,924 - +1.1 2,433,941 + +0.1 2,434,022 - -0.1 2,434,022 - -0.7 2,434,022 - +0.1 2,434,181 + OHPLBJKB_02330 0.16 -1.0 2,434,181 + OHPLBJKB_02330 0.16 +1.2 2,434,182 - OHPLBJKB_02330 0.16 +0.1 2,434,247 + OHPLBJKB_02330 0.18 +0.4 2,434,283 + OHPLBJKB_02330 0.20 +0.8 2,434,287 + OHPLBJKB_02330 0.20 +1.0 2,434,288 - OHPLBJKB_02330 0.20 -1.5 2,434,288 - OHPLBJKB_02330 0.20 +0.8 2,434,288 - OHPLBJKB_02330 0.20 +0.2 2,434,288 - OHPLBJKB_02330 0.20 +0.1 2,434,302 + OHPLBJKB_02330 0.20 -0.9 2,434,302 + OHPLBJKB_02330 0.20 -0.7 2,434,302 + OHPLBJKB_02330 0.20 +0.9 2,434,395 - OHPLBJKB_02330 0.24 -0.2
Or see this region's nucleotide sequence