Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00545

Experiment: Sew9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00543 and OHPLBJKB_00544 overlap by 7 nucleotidesOHPLBJKB_00544 and OHPLBJKB_00545 overlap by 14 nucleotidesOHPLBJKB_00545 and OHPLBJKB_00546 are separated by 41 nucleotidesOHPLBJKB_00546 and OHPLBJKB_00547 overlap by 21 nucleotides OHPLBJKB_00543: OHPLBJKB_00543 - hypothetical protein, at 558,699 to 559,223 _00543 OHPLBJKB_00544: OHPLBJKB_00544 - hypothetical protein, at 559,217 to 559,720 _00544 OHPLBJKB_00545: OHPLBJKB_00545 - hypothetical protein, at 559,707 to 560,018 _00545 OHPLBJKB_00546: OHPLBJKB_00546 - hypothetical protein, at 560,060 to 560,503 _00546 OHPLBJKB_00547: OHPLBJKB_00547 - Protein/nucleic acid deglycase 2, at 560,483 to 561,001 _00547 Position (kb) 559 560 561Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 558.755 kb on - strand, within OHPLBJKB_00543at 558.808 kb on + strand, within OHPLBJKB_00543at 558.809 kb on - strand, within OHPLBJKB_00543at 558.871 kb on + strand, within OHPLBJKB_00543at 558.872 kb on - strand, within OHPLBJKB_00543at 558.875 kb on + strand, within OHPLBJKB_00543at 558.875 kb on + strand, within OHPLBJKB_00543at 558.875 kb on + strand, within OHPLBJKB_00543at 558.875 kb on + strand, within OHPLBJKB_00543at 558.876 kb on - strand, within OHPLBJKB_00543at 558.876 kb on - strand, within OHPLBJKB_00543at 558.908 kb on + strand, within OHPLBJKB_00543at 558.908 kb on + strand, within OHPLBJKB_00543at 558.908 kb on + strand, within OHPLBJKB_00543at 558.908 kb on + strand, within OHPLBJKB_00543at 558.908 kb on + strand, within OHPLBJKB_00543at 559.007 kb on + strand, within OHPLBJKB_00543at 559.077 kb on + strand, within OHPLBJKB_00543at 559.077 kb on + strand, within OHPLBJKB_00543at 559.078 kb on - strand, within OHPLBJKB_00543at 559.078 kb on - strand, within OHPLBJKB_00543at 559.078 kb on - strand, within OHPLBJKB_00543at 559.078 kb on - strand, within OHPLBJKB_00543at 559.078 kb on - strand, within OHPLBJKB_00543at 559.078 kb on - strand, within OHPLBJKB_00543at 559.207 kb on + strandat 559.221 kb on + strandat 559.221 kb on + strandat 559.221 kb on + strandat 559.222 kb on - strandat 559.393 kb on + strand, within OHPLBJKB_00544at 559.393 kb on + strand, within OHPLBJKB_00544at 559.393 kb on + strand, within OHPLBJKB_00544at 559.394 kb on - strand, within OHPLBJKB_00544at 559.394 kb on - strand, within OHPLBJKB_00544at 559.463 kb on + strand, within OHPLBJKB_00544at 559.496 kb on + strand, within OHPLBJKB_00544at 559.529 kb on + strand, within OHPLBJKB_00544at 559.644 kb on + strand, within OHPLBJKB_00544at 559.644 kb on + strand, within OHPLBJKB_00544at 559.645 kb on - strand, within OHPLBJKB_00544at 559.694 kb on + strandat 559.718 kb on + strandat 559.718 kb on + strandat 559.719 kb on - strandat 559.960 kb on + strand, within OHPLBJKB_00545at 559.961 kb on - strand, within OHPLBJKB_00545at 559.961 kb on - strand, within OHPLBJKB_00545at 560.043 kb on + strandat 560.045 kb on + strandat 560.045 kb on + strandat 560.046 kb on - strandat 560.159 kb on + strand, within OHPLBJKB_00546at 560.160 kb on - strand, within OHPLBJKB_00546at 560.160 kb on - strand, within OHPLBJKB_00546at 560.286 kb on + strand, within OHPLBJKB_00546at 560.287 kb on - strand, within OHPLBJKB_00546at 560.305 kb on + strand, within OHPLBJKB_00546at 560.306 kb on - strand, within OHPLBJKB_00546at 560.360 kb on + strand, within OHPLBJKB_00546at 560.360 kb on + strand, within OHPLBJKB_00546at 560.361 kb on - strand, within OHPLBJKB_00546at 560.587 kb on - strand, within OHPLBJKB_00547at 560.617 kb on + strand, within OHPLBJKB_00547at 560.766 kb on + strand, within OHPLBJKB_00547at 560.766 kb on + strand, within OHPLBJKB_00547at 560.767 kb on - strand, within OHPLBJKB_00547at 560.836 kb on + strand, within OHPLBJKB_00547at 560.902 kb on + strand, within OHPLBJKB_00547at 560.902 kb on + strand, within OHPLBJKB_00547at 560.947 kb on + strand, within OHPLBJKB_00547at 560.947 kb on + strand, within OHPLBJKB_00547at 560.948 kb on - strand, within OHPLBJKB_00547at 560.948 kb on - strand, within OHPLBJKB_00547

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Per-strain Table

Position Strand Gene LocusTag Fraction Sew9
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558,755 - OHPLBJKB_00543 0.11 -1.1
558,808 + OHPLBJKB_00543 0.21 +0.8
558,809 - OHPLBJKB_00543 0.21 -0.7
558,871 + OHPLBJKB_00543 0.33 +0.4
558,872 - OHPLBJKB_00543 0.33 +1.4
558,875 + OHPLBJKB_00543 0.34 +0.4
558,875 + OHPLBJKB_00543 0.34 +1.3
558,875 + OHPLBJKB_00543 0.34 +0.5
558,875 + OHPLBJKB_00543 0.34 -0.8
558,876 - OHPLBJKB_00543 0.34 -0.1
558,876 - OHPLBJKB_00543 0.34 -0.1
558,908 + OHPLBJKB_00543 0.40 +0.4
558,908 + OHPLBJKB_00543 0.40 +0.1
558,908 + OHPLBJKB_00543 0.40 -0.6
558,908 + OHPLBJKB_00543 0.40 +0.2
558,908 + OHPLBJKB_00543 0.40 -0.6
559,007 + OHPLBJKB_00543 0.59 -0.6
559,077 + OHPLBJKB_00543 0.72 +1.4
559,077 + OHPLBJKB_00543 0.72 -2.3
559,078 - OHPLBJKB_00543 0.72 +0.5
559,078 - OHPLBJKB_00543 0.72 +3.8
559,078 - OHPLBJKB_00543 0.72 +0.8
559,078 - OHPLBJKB_00543 0.72 +0.9
559,078 - OHPLBJKB_00543 0.72 +1.2
559,078 - OHPLBJKB_00543 0.72 -0.3
559,207 + +0.0
559,221 + +0.2
559,221 + -0.0
559,221 + -0.3
559,222 - +0.6
559,393 + OHPLBJKB_00544 0.35 +0.4
559,393 + OHPLBJKB_00544 0.35 +0.2
559,393 + OHPLBJKB_00544 0.35 -0.4
559,394 - OHPLBJKB_00544 0.35 +0.3
559,394 - OHPLBJKB_00544 0.35 +0.9
559,463 + OHPLBJKB_00544 0.49 -1.6
559,496 + OHPLBJKB_00544 0.55 +0.2
559,529 + OHPLBJKB_00544 0.62 +0.3
559,644 + OHPLBJKB_00544 0.85 +0.3
559,644 + OHPLBJKB_00544 0.85 -1.2
559,645 - OHPLBJKB_00544 0.85 -0.3
559,694 + -0.8
559,718 + -0.0
559,718 + -0.1
559,719 - -0.1
559,960 + OHPLBJKB_00545 0.81 -0.0
559,961 - OHPLBJKB_00545 0.81 -1.6
559,961 - OHPLBJKB_00545 0.81 -0.6
560,043 + -1.7
560,045 + -0.7
560,045 + +0.4
560,046 - +0.1
560,159 + OHPLBJKB_00546 0.22 +0.2
560,160 - OHPLBJKB_00546 0.23 -0.2
560,160 - OHPLBJKB_00546 0.23 -0.7
560,286 + OHPLBJKB_00546 0.51 +0.7
560,287 - OHPLBJKB_00546 0.51 +0.2
560,305 + OHPLBJKB_00546 0.55 -0.5
560,306 - OHPLBJKB_00546 0.55 -0.3
560,360 + OHPLBJKB_00546 0.68 -0.4
560,360 + OHPLBJKB_00546 0.68 -0.1
560,361 - OHPLBJKB_00546 0.68 +1.2
560,587 - OHPLBJKB_00547 0.20 +0.0
560,617 + OHPLBJKB_00547 0.26 +0.5
560,766 + OHPLBJKB_00547 0.55 +0.8
560,766 + OHPLBJKB_00547 0.55 -1.0
560,767 - OHPLBJKB_00547 0.55 -0.9
560,836 + OHPLBJKB_00547 0.68 -0.0
560,902 + OHPLBJKB_00547 0.81 +0.2
560,902 + OHPLBJKB_00547 0.81 +0.9
560,947 + OHPLBJKB_00547 0.89 -1.0
560,947 + OHPLBJKB_00547 0.89 +0.0
560,948 - OHPLBJKB_00547 0.90 -0.6
560,948 - OHPLBJKB_00547 0.90 +0.4

Or see this region's nucleotide sequence