Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00331

Experiment: Sew9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00329 and OHPLBJKB_00330 overlap by 4 nucleotidesOHPLBJKB_00330 and OHPLBJKB_00331 are separated by 49 nucleotidesOHPLBJKB_00331 and OHPLBJKB_00332 are separated by 20 nucleotides OHPLBJKB_00329: OHPLBJKB_00329 - Fructoselysine 6-kinase, at 362,604 to 363,389 _00329 OHPLBJKB_00330: OHPLBJKB_00330 - Fructoselysine 3-epimerase, at 363,386 to 364,216 _00330 OHPLBJKB_00331: OHPLBJKB_00331 - Fructoselysine 6-phosphate deglycase, at 364,266 to 365,288 _00331 OHPLBJKB_00332: OHPLBJKB_00332 - putative fructoselysine/psicoselysine transporter FrlA, at 365,309 to 366,646 _00332 Position (kb) 364 365 366Strain fitness (log2 ratio) -2 -1 0 1 2at 363.273 kb on + strand, within OHPLBJKB_00329at 363.274 kb on - strand, within OHPLBJKB_00329at 363.274 kb on - strand, within OHPLBJKB_00329at 363.274 kb on - strand, within OHPLBJKB_00329at 363.274 kb on - strand, within OHPLBJKB_00329at 363.292 kb on + strand, within OHPLBJKB_00329at 363.292 kb on + strand, within OHPLBJKB_00329at 363.293 kb on - strand, within OHPLBJKB_00329at 363.293 kb on - strand, within OHPLBJKB_00329at 363.293 kb on - strand, within OHPLBJKB_00329at 363.293 kb on - strand, within OHPLBJKB_00329at 363.363 kb on - strandat 363.460 kb on + strandat 363.462 kb on + strandat 363.462 kb on + strandat 363.462 kb on + strandat 363.462 kb on + strandat 363.462 kb on + strandat 363.462 kb on + strandat 363.462 kb on + strandat 363.462 kb on + strandat 363.462 kb on + strandat 363.462 kb on + strandat 363.462 kb on + strandat 363.463 kb on - strandat 363.463 kb on - strandat 363.463 kb on - strandat 363.463 kb on - strandat 363.463 kb on - strandat 363.463 kb on - strandat 363.463 kb on - strandat 363.463 kb on - strandat 363.484 kb on + strand, within OHPLBJKB_00330at 363.484 kb on + strand, within OHPLBJKB_00330at 363.499 kb on - strand, within OHPLBJKB_00330at 363.511 kb on + strand, within OHPLBJKB_00330at 363.512 kb on - strand, within OHPLBJKB_00330at 363.561 kb on + strand, within OHPLBJKB_00330at 363.562 kb on - strand, within OHPLBJKB_00330at 363.562 kb on - strand, within OHPLBJKB_00330at 363.562 kb on - strand, within OHPLBJKB_00330at 363.608 kb on + strand, within OHPLBJKB_00330at 363.608 kb on + strand, within OHPLBJKB_00330at 363.609 kb on - strand, within OHPLBJKB_00330at 363.609 kb on - strand, within OHPLBJKB_00330at 363.634 kb on - strand, within OHPLBJKB_00330at 363.660 kb on + strand, within OHPLBJKB_00330at 363.661 kb on - strand, within OHPLBJKB_00330at 363.733 kb on + strand, within OHPLBJKB_00330at 363.733 kb on + strand, within OHPLBJKB_00330at 363.734 kb on - strand, within OHPLBJKB_00330at 363.739 kb on + strand, within OHPLBJKB_00330at 363.782 kb on + strand, within OHPLBJKB_00330at 363.783 kb on - strand, within OHPLBJKB_00330at 363.851 kb on - strand, within OHPLBJKB_00330at 363.856 kb on + strand, within OHPLBJKB_00330at 363.856 kb on + strand, within OHPLBJKB_00330at 363.856 kb on + strand, within OHPLBJKB_00330at 363.856 kb on + strand, within OHPLBJKB_00330at 363.856 kb on + strand, within OHPLBJKB_00330at 363.856 kb on + strand, within OHPLBJKB_00330at 363.857 kb on - strand, within OHPLBJKB_00330at 363.857 kb on - strand, within OHPLBJKB_00330at 363.857 kb on - strand, within OHPLBJKB_00330at 363.857 kb on - strand, within OHPLBJKB_00330at 363.857 kb on - strand, within OHPLBJKB_00330at 363.857 kb on - strand, within OHPLBJKB_00330at 363.857 kb on - strand, within OHPLBJKB_00330at 363.857 kb on - strand, within OHPLBJKB_00330at 363.857 kb on - strand, within OHPLBJKB_00330at 363.857 kb on - strand, within OHPLBJKB_00330at 363.898 kb on + strand, within OHPLBJKB_00330at 363.898 kb on + strand, within OHPLBJKB_00330at 363.898 kb on + strand, within OHPLBJKB_00330at 363.898 kb on + strand, within OHPLBJKB_00330at 363.899 kb on - strand, within OHPLBJKB_00330at 363.925 kb on + strand, within OHPLBJKB_00330at 363.967 kb on + strand, within OHPLBJKB_00330at 363.967 kb on + strand, within OHPLBJKB_00330at 363.967 kb on + strand, within OHPLBJKB_00330at 363.968 kb on - strand, within OHPLBJKB_00330at 363.968 kb on - strand, within OHPLBJKB_00330at 363.968 kb on - strand, within OHPLBJKB_00330at 363.968 kb on - strand, within OHPLBJKB_00330at 363.992 kb on - strand, within OHPLBJKB_00330at 363.993 kb on + strand, within OHPLBJKB_00330at 363.994 kb on - strand, within OHPLBJKB_00330at 364.018 kb on + strand, within OHPLBJKB_00330at 364.018 kb on + strand, within OHPLBJKB_00330at 364.020 kb on + strand, within OHPLBJKB_00330at 364.085 kb on + strand, within OHPLBJKB_00330at 364.198 kb on + strandat 364.204 kb on + strandat 364.204 kb on + strandat 364.204 kb on + strandat 364.205 kb on - strandat 364.205 kb on - strandat 364.205 kb on - strandat 364.205 kb on - strandat 364.205 kb on - strandat 364.205 kb on - strandat 364.205 kb on - strandat 364.205 kb on - strandat 364.205 kb on - strandat 364.233 kb on + strandat 364.234 kb on - strandat 364.234 kb on - strandat 364.234 kb on - strandat 364.267 kb on + strandat 364.267 kb on + strandat 364.268 kb on - strandat 364.270 kb on + strandat 364.321 kb on + strandat 364.333 kb on + strandat 364.333 kb on + strandat 364.333 kb on + strandat 364.334 kb on - strandat 364.334 kb on - strandat 364.334 kb on - strandat 364.334 kb on - strandat 364.334 kb on - strandat 364.336 kb on + strandat 364.337 kb on - strandat 364.337 kb on - strandat 364.337 kb on - strandat 364.436 kb on + strand, within OHPLBJKB_00331at 364.436 kb on + strand, within OHPLBJKB_00331at 364.437 kb on - strand, within OHPLBJKB_00331at 364.445 kb on + strand, within OHPLBJKB_00331at 364.445 kb on + strand, within OHPLBJKB_00331at 364.455 kb on - strand, within OHPLBJKB_00331at 364.455 kb on - strand, within OHPLBJKB_00331at 364.602 kb on + strand, within OHPLBJKB_00331at 364.602 kb on + strand, within OHPLBJKB_00331at 364.602 kb on + strand, within OHPLBJKB_00331at 364.602 kb on + strand, within OHPLBJKB_00331at 364.654 kb on + strand, within OHPLBJKB_00331at 364.655 kb on - strand, within OHPLBJKB_00331at 364.848 kb on - strand, within OHPLBJKB_00331at 364.966 kb on - strand, within OHPLBJKB_00331at 364.966 kb on - strand, within OHPLBJKB_00331at 365.146 kb on + strand, within OHPLBJKB_00331at 365.147 kb on - strand, within OHPLBJKB_00331at 365.151 kb on - strand, within OHPLBJKB_00331at 365.151 kb on - strand, within OHPLBJKB_00331at 365.274 kb on - strandat 365.292 kb on - strandat 365.311 kb on - strandat 365.355 kb on + strandat 365.356 kb on - strandat 365.372 kb on - strandat 365.667 kb on + strand, within OHPLBJKB_00332at 365.724 kb on + strand, within OHPLBJKB_00332at 365.742 kb on + strand, within OHPLBJKB_00332at 365.919 kb on + strand, within OHPLBJKB_00332at 365.919 kb on + strand, within OHPLBJKB_00332at 365.919 kb on + strand, within OHPLBJKB_00332at 365.920 kb on - strand, within OHPLBJKB_00332at 365.920 kb on - strand, within OHPLBJKB_00332at 365.998 kb on + strand, within OHPLBJKB_00332at 365.998 kb on + strand, within OHPLBJKB_00332at 365.998 kb on + strand, within OHPLBJKB_00332at 365.998 kb on + strand, within OHPLBJKB_00332at 365.998 kb on + strand, within OHPLBJKB_00332at 365.999 kb on - strand, within OHPLBJKB_00332at 365.999 kb on - strand, within OHPLBJKB_00332at 365.999 kb on - strand, within OHPLBJKB_00332at 365.999 kb on - strand, within OHPLBJKB_00332at 366.000 kb on + strand, within OHPLBJKB_00332at 366.000 kb on + strand, within OHPLBJKB_00332at 366.007 kb on + strand, within OHPLBJKB_00332at 366.008 kb on - strand, within OHPLBJKB_00332at 366.008 kb on - strand, within OHPLBJKB_00332at 366.024 kb on + strand, within OHPLBJKB_00332at 366.024 kb on + strand, within OHPLBJKB_00332at 366.025 kb on - strand, within OHPLBJKB_00332at 366.121 kb on + strand, within OHPLBJKB_00332at 366.122 kb on - strand, within OHPLBJKB_00332at 366.178 kb on + strand, within OHPLBJKB_00332at 366.178 kb on + strand, within OHPLBJKB_00332at 366.178 kb on + strand, within OHPLBJKB_00332at 366.179 kb on - strand, within OHPLBJKB_00332at 366.179 kb on - strand, within OHPLBJKB_00332at 366.182 kb on + strand, within OHPLBJKB_00332at 366.225 kb on - strand, within OHPLBJKB_00332at 366.232 kb on + strand, within OHPLBJKB_00332at 366.233 kb on - strand, within OHPLBJKB_00332at 366.233 kb on - strand, within OHPLBJKB_00332

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Per-strain Table

Position Strand Gene LocusTag Fraction Sew9
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363,273 + OHPLBJKB_00329 0.85 -1.5
363,274 - OHPLBJKB_00329 0.85 +1.5
363,274 - OHPLBJKB_00329 0.85 -0.6
363,274 - OHPLBJKB_00329 0.85 -0.1
363,274 - OHPLBJKB_00329 0.85 +0.2
363,292 + OHPLBJKB_00329 0.88 +0.0
363,292 + OHPLBJKB_00329 0.88 +0.3
363,293 - OHPLBJKB_00329 0.88 +0.0
363,293 - OHPLBJKB_00329 0.88 +0.9
363,293 - OHPLBJKB_00329 0.88 +0.8
363,293 - OHPLBJKB_00329 0.88 +0.7
363,363 - +0.6
363,460 + -0.2
363,462 + -0.4
363,462 + +2.1
363,462 + -1.0
363,462 + -0.7
363,462 + -0.4
363,462 + +0.3
363,462 + -0.2
363,462 + -0.7
363,462 + -0.8
363,462 + -1.8
363,462 + -0.6
363,463 - +0.1
363,463 - -0.0
363,463 - +1.0
363,463 - +0.3
363,463 - +0.5
363,463 - -1.6
363,463 - +0.8
363,463 - +0.0
363,484 + OHPLBJKB_00330 0.12 +0.1
363,484 + OHPLBJKB_00330 0.12 -1.2
363,499 - OHPLBJKB_00330 0.14 -0.0
363,511 + OHPLBJKB_00330 0.15 -1.1
363,512 - OHPLBJKB_00330 0.15 -0.9
363,561 + OHPLBJKB_00330 0.21 +1.3
363,562 - OHPLBJKB_00330 0.21 -0.4
363,562 - OHPLBJKB_00330 0.21 +1.2
363,562 - OHPLBJKB_00330 0.21 +0.4
363,608 + OHPLBJKB_00330 0.27 -0.2
363,608 + OHPLBJKB_00330 0.27 -0.4
363,609 - OHPLBJKB_00330 0.27 +0.2
363,609 - OHPLBJKB_00330 0.27 -0.8
363,634 - OHPLBJKB_00330 0.30 -1.2
363,660 + OHPLBJKB_00330 0.33 +0.5
363,661 - OHPLBJKB_00330 0.33 -0.4
363,733 + OHPLBJKB_00330 0.42 -0.8
363,733 + OHPLBJKB_00330 0.42 +1.8
363,734 - OHPLBJKB_00330 0.42 -1.2
363,739 + OHPLBJKB_00330 0.42 +1.1
363,782 + OHPLBJKB_00330 0.48 -0.6
363,783 - OHPLBJKB_00330 0.48 -0.5
363,851 - OHPLBJKB_00330 0.56 +1.0
363,856 + OHPLBJKB_00330 0.57 -1.4
363,856 + OHPLBJKB_00330 0.57 -0.3
363,856 + OHPLBJKB_00330 0.57 +1.0
363,856 + OHPLBJKB_00330 0.57 -1.3
363,856 + OHPLBJKB_00330 0.57 +0.4
363,856 + OHPLBJKB_00330 0.57 -0.4
363,857 - OHPLBJKB_00330 0.57 -0.5
363,857 - OHPLBJKB_00330 0.57 +0.5
363,857 - OHPLBJKB_00330 0.57 +0.4
363,857 - OHPLBJKB_00330 0.57 +0.0
363,857 - OHPLBJKB_00330 0.57 -1.3
363,857 - OHPLBJKB_00330 0.57 -0.3
363,857 - OHPLBJKB_00330 0.57 +0.6
363,857 - OHPLBJKB_00330 0.57 +0.7
363,857 - OHPLBJKB_00330 0.57 +0.6
363,857 - OHPLBJKB_00330 0.57 +0.0
363,898 + OHPLBJKB_00330 0.62 -0.1
363,898 + OHPLBJKB_00330 0.62 +0.3
363,898 + OHPLBJKB_00330 0.62 -0.8
363,898 + OHPLBJKB_00330 0.62 -0.9
363,899 - OHPLBJKB_00330 0.62 -0.4
363,925 + OHPLBJKB_00330 0.65 +0.6
363,967 + OHPLBJKB_00330 0.70 +0.3
363,967 + OHPLBJKB_00330 0.70 +0.5
363,967 + OHPLBJKB_00330 0.70 +1.6
363,968 - OHPLBJKB_00330 0.70 -0.1
363,968 - OHPLBJKB_00330 0.70 +1.0
363,968 - OHPLBJKB_00330 0.70 +0.8
363,968 - OHPLBJKB_00330 0.70 +1.2
363,992 - OHPLBJKB_00330 0.73 -0.4
363,993 + OHPLBJKB_00330 0.73 -0.5
363,994 - OHPLBJKB_00330 0.73 -0.4
364,018 + OHPLBJKB_00330 0.76 -1.5
364,018 + OHPLBJKB_00330 0.76 -2.1
364,020 + OHPLBJKB_00330 0.76 -0.4
364,085 + OHPLBJKB_00330 0.84 +0.7
364,198 + +0.2
364,204 + -1.4
364,204 + -0.8
364,204 + +0.8
364,205 - +0.3
364,205 - +0.5
364,205 - +0.2
364,205 - -1.1
364,205 - -1.1
364,205 - +0.1
364,205 - +0.5
364,205 - +1.3
364,205 - -0.3
364,233 + +0.8
364,234 - +0.6
364,234 - +0.6
364,234 - -0.2
364,267 + +0.5
364,267 + +0.6
364,268 - +1.2
364,270 + -0.6
364,321 + +0.1
364,333 + -0.4
364,333 + +0.1
364,333 + -0.6
364,334 - -0.4
364,334 - +0.9
364,334 - +0.2
364,334 - -0.8
364,334 - +0.4
364,336 + +0.1
364,337 - -0.5
364,337 - +0.0
364,337 - -0.5
364,436 + OHPLBJKB_00331 0.17 +0.0
364,436 + OHPLBJKB_00331 0.17 -0.3
364,437 - OHPLBJKB_00331 0.17 -0.4
364,445 + OHPLBJKB_00331 0.17 +0.6
364,445 + OHPLBJKB_00331 0.17 +0.9
364,455 - OHPLBJKB_00331 0.18 +0.8
364,455 - OHPLBJKB_00331 0.18 -1.3
364,602 + OHPLBJKB_00331 0.33 -1.8
364,602 + OHPLBJKB_00331 0.33 -0.3
364,602 + OHPLBJKB_00331 0.33 -0.0
364,602 + OHPLBJKB_00331 0.33 -0.7
364,654 + OHPLBJKB_00331 0.38 +0.3
364,655 - OHPLBJKB_00331 0.38 -0.4
364,848 - OHPLBJKB_00331 0.57 -0.3
364,966 - OHPLBJKB_00331 0.68 -0.2
364,966 - OHPLBJKB_00331 0.68 -0.1
365,146 + OHPLBJKB_00331 0.86 +1.5
365,147 - OHPLBJKB_00331 0.86 +0.4
365,151 - OHPLBJKB_00331 0.87 -0.4
365,151 - OHPLBJKB_00331 0.87 +0.0
365,274 - +0.2
365,292 - +0.3
365,311 - +0.5
365,355 + +0.3
365,356 - -0.2
365,372 - -1.7
365,667 + OHPLBJKB_00332 0.27 +0.8
365,724 + OHPLBJKB_00332 0.31 +0.5
365,742 + OHPLBJKB_00332 0.32 -0.0
365,919 + OHPLBJKB_00332 0.46 +0.6
365,919 + OHPLBJKB_00332 0.46 +0.3
365,919 + OHPLBJKB_00332 0.46 -0.4
365,920 - OHPLBJKB_00332 0.46 +0.7
365,920 - OHPLBJKB_00332 0.46 -0.0
365,998 + OHPLBJKB_00332 0.51 +0.0
365,998 + OHPLBJKB_00332 0.51 -0.5
365,998 + OHPLBJKB_00332 0.51 +0.3
365,998 + OHPLBJKB_00332 0.51 +1.3
365,998 + OHPLBJKB_00332 0.51 -0.5
365,999 - OHPLBJKB_00332 0.52 -2.0
365,999 - OHPLBJKB_00332 0.52 -1.3
365,999 - OHPLBJKB_00332 0.52 +0.3
365,999 - OHPLBJKB_00332 0.52 -0.8
366,000 + OHPLBJKB_00332 0.52 -0.2
366,000 + OHPLBJKB_00332 0.52 -0.3
366,007 + OHPLBJKB_00332 0.52 -0.5
366,008 - OHPLBJKB_00332 0.52 -0.2
366,008 - OHPLBJKB_00332 0.52 -0.1
366,024 + OHPLBJKB_00332 0.53 +0.7
366,024 + OHPLBJKB_00332 0.53 -0.3
366,025 - OHPLBJKB_00332 0.54 +1.2
366,121 + OHPLBJKB_00332 0.61 +0.7
366,122 - OHPLBJKB_00332 0.61 -0.2
366,178 + OHPLBJKB_00332 0.65 -0.5
366,178 + OHPLBJKB_00332 0.65 +0.4
366,178 + OHPLBJKB_00332 0.65 -0.2
366,179 - OHPLBJKB_00332 0.65 +0.4
366,179 - OHPLBJKB_00332 0.65 -0.5
366,182 + OHPLBJKB_00332 0.65 +0.9
366,225 - OHPLBJKB_00332 0.68 -2.4
366,232 + OHPLBJKB_00332 0.69 -0.6
366,233 - OHPLBJKB_00332 0.69 +0.4
366,233 - OHPLBJKB_00332 0.69 +0.3

Or see this region's nucleotide sequence