Strain Fitness in Erwinia amylovora T8 around OLJFJH_17430

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_17420 and OLJFJH_17425 are separated by 256 nucleotidesOLJFJH_17425 and OLJFJH_17430 are separated by 95 nucleotidesOLJFJH_17430 and OLJFJH_17435 are separated by 919 nucleotides OLJFJH_17420: OLJFJH_17420 - hypothetical protein, at 3,680,291 to 3,680,647 _17420 OLJFJH_17425: OLJFJH_17425 - Nickel/cobalt transporter regulator, at 3,680,904 to 3,681,416 _17425 OLJFJH_17430: OLJFJH_17430 - OsmC family peroxiredoxin, at 3,681,512 to 3,681,943 _17430 OLJFJH_17435: OLJFJH_17435 - tRNA-Gly, at 3,682,863 to 3,682,936 _17435 Position (kb) 3681 3682Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3680.668 kb on + strandat 3680.669 kb on - strandat 3680.709 kb on - strandat 3680.752 kb on + strandat 3680.753 kb on - strandat 3680.753 kb on - strandat 3680.781 kb on + strandat 3680.781 kb on + strandat 3680.796 kb on + strandat 3680.797 kb on - strandat 3680.850 kb on + strandat 3680.857 kb on + strandat 3680.980 kb on + strand, within OLJFJH_17425at 3680.980 kb on + strand, within OLJFJH_17425at 3680.980 kb on + strand, within OLJFJH_17425at 3680.981 kb on - strand, within OLJFJH_17425at 3680.981 kb on - strand, within OLJFJH_17425at 3680.981 kb on - strand, within OLJFJH_17425at 3680.991 kb on + strand, within OLJFJH_17425at 3680.993 kb on + strand, within OLJFJH_17425at 3680.993 kb on + strand, within OLJFJH_17425at 3680.993 kb on + strand, within OLJFJH_17425at 3680.993 kb on + strand, within OLJFJH_17425at 3680.993 kb on + strand, within OLJFJH_17425at 3680.993 kb on + strand, within OLJFJH_17425at 3680.994 kb on - strand, within OLJFJH_17425at 3680.995 kb on + strand, within OLJFJH_17425at 3680.995 kb on + strand, within OLJFJH_17425at 3680.995 kb on + strand, within OLJFJH_17425at 3681.131 kb on + strand, within OLJFJH_17425at 3681.132 kb on - strand, within OLJFJH_17425at 3681.132 kb on - strand, within OLJFJH_17425at 3681.284 kb on + strand, within OLJFJH_17425at 3681.285 kb on - strand, within OLJFJH_17425at 3681.430 kb on + strandat 3681.431 kb on - strandat 3681.431 kb on - strandat 3681.528 kb on + strandat 3681.547 kb on + strandat 3681.658 kb on + strand, within OLJFJH_17430at 3681.931 kb on + strandat 3681.931 kb on + strandat 3681.962 kb on + strandat 3681.972 kb on + strandat 3681.980 kb on + strandat 3682.029 kb on + strandat 3682.047 kb on - strandat 3682.049 kb on + strandat 3682.049 kb on + strandat 3682.049 kb on + strandat 3682.049 kb on + strandat 3682.049 kb on + strandat 3682.049 kb on + strandat 3682.050 kb on - strandat 3682.050 kb on - strandat 3682.050 kb on - strandat 3682.161 kb on + strandat 3682.163 kb on + strandat 3682.176 kb on - strandat 3682.249 kb on + strandat 3682.250 kb on - strandat 3682.342 kb on + strandat 3682.342 kb on + strandat 3682.342 kb on + strandat 3682.393 kb on + strandat 3682.393 kb on + strandat 3682.393 kb on + strandat 3682.393 kb on + strandat 3682.393 kb on + strandat 3682.461 kb on - strandat 3682.507 kb on + strandat 3682.508 kb on - strandat 3682.524 kb on - strandat 3682.665 kb on + strandat 3682.679 kb on + strandat 3682.679 kb on + strandat 3682.680 kb on - strandat 3682.807 kb on - strandat 3682.834 kb on + strandat 3682.836 kb on + strandat 3682.847 kb on + strandat 3682.848 kb on - strandat 3682.873 kb on + strand, within OLJFJH_17435at 3682.873 kb on + strand, within OLJFJH_17435at 3682.874 kb on - strand, within OLJFJH_17435at 3682.875 kb on + strand, within OLJFJH_17435at 3682.876 kb on - strand, within OLJFJH_17435at 3682.882 kb on - strand, within OLJFJH_17435at 3682.884 kb on + strand, within OLJFJH_17435

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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3,680,668 + -0.8
3,680,669 - +2.2
3,680,709 - -0.3
3,680,752 + -1.0
3,680,753 - -0.6
3,680,753 - -2.0
3,680,781 + +0.3
3,680,781 + +2.6
3,680,796 + -0.4
3,680,797 - +0.7
3,680,850 + +0.9
3,680,857 + +4.8
3,680,980 + OLJFJH_17425 0.15 -1.1
3,680,980 + OLJFJH_17425 0.15 +1.1
3,680,980 + OLJFJH_17425 0.15 +0.2
3,680,981 - OLJFJH_17425 0.15 -0.4
3,680,981 - OLJFJH_17425 0.15 +0.1
3,680,981 - OLJFJH_17425 0.15 -0.0
3,680,991 + OLJFJH_17425 0.17 +1.7
3,680,993 + OLJFJH_17425 0.17 +2.2
3,680,993 + OLJFJH_17425 0.17 -1.3
3,680,993 + OLJFJH_17425 0.17 +0.6
3,680,993 + OLJFJH_17425 0.17 +0.9
3,680,993 + OLJFJH_17425 0.17 -0.6
3,680,993 + OLJFJH_17425 0.17 -0.0
3,680,994 - OLJFJH_17425 0.18 -0.2
3,680,995 + OLJFJH_17425 0.18 +0.9
3,680,995 + OLJFJH_17425 0.18 +1.3
3,680,995 + OLJFJH_17425 0.18 +2.6
3,681,131 + OLJFJH_17425 0.44 -0.9
3,681,132 - OLJFJH_17425 0.44 -0.4
3,681,132 - OLJFJH_17425 0.44 -0.2
3,681,284 + OLJFJH_17425 0.74 -0.8
3,681,285 - OLJFJH_17425 0.74 -2.0
3,681,430 + +1.3
3,681,431 - -0.8
3,681,431 - +0.5
3,681,528 + +0.6
3,681,547 + -1.2
3,681,658 + OLJFJH_17430 0.34 -1.3
3,681,931 + -0.7
3,681,931 + -1.4
3,681,962 + +1.1
3,681,972 + +0.9
3,681,980 + -0.2
3,682,029 + +0.3
3,682,047 - +1.8
3,682,049 + -0.1
3,682,049 + +1.5
3,682,049 + -1.0
3,682,049 + +0.2
3,682,049 + -0.9
3,682,049 + +1.2
3,682,050 - -0.4
3,682,050 - +0.3
3,682,050 - -0.3
3,682,161 + -1.4
3,682,163 + +1.1
3,682,176 - +0.3
3,682,249 + -2.0
3,682,250 - +0.8
3,682,342 + +0.2
3,682,342 + +0.2
3,682,342 + +1.3
3,682,393 + +0.3
3,682,393 + +0.6
3,682,393 + +0.0
3,682,393 + -0.5
3,682,393 + -1.6
3,682,461 - +0.4
3,682,507 + -1.0
3,682,508 - +0.3
3,682,524 - +0.2
3,682,665 + -0.1
3,682,679 + -0.0
3,682,679 + +0.1
3,682,680 - +0.3
3,682,807 - -1.0
3,682,834 + -0.8
3,682,836 + -2.2
3,682,847 + -0.4
3,682,848 - +1.4
3,682,873 + OLJFJH_17435 0.14 +0.7
3,682,873 + OLJFJH_17435 0.14 +0.8
3,682,874 - OLJFJH_17435 0.15 +0.2
3,682,875 + OLJFJH_17435 0.16 +0.0
3,682,876 - OLJFJH_17435 0.18 +0.6
3,682,882 - OLJFJH_17435 0.26 +0.3
3,682,884 + OLJFJH_17435 0.28 -0.2

Or see this region's nucleotide sequence