Strain Fitness in Erwinia amylovora T8 around OLJFJH_15945

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_15935 and OLJFJH_15940 are separated by 89 nucleotidesOLJFJH_15940 and OLJFJH_15945 are separated by 112 nucleotidesOLJFJH_15945 and OLJFJH_15950 are separated by 69 nucleotides OLJFJH_15935: OLJFJH_15935 - porin OmpA, at 3,353,123 to 3,354,190 _15935 OLJFJH_15940: OLJFJH_15940 - macrodomain Ter protein MatP, at 3,354,280 to 3,354,732 _15940 OLJFJH_15945: OLJFJH_15945 - Lon protease, at 3,354,845 to 3,356,680 _15945 OLJFJH_15950: OLJFJH_15950 - bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase, at 3,356,750 to 3,357,268 _15950 Position (kb) 3354 3355 3356 3357Strain fitness (log2 ratio) -3 -2 -1 0 1at 3354.188 kb on + strandat 3354.188 kb on + strandat 3354.188 kb on + strandat 3354.244 kb on - strandat 3354.252 kb on + strandat 3354.338 kb on + strand, within OLJFJH_15940at 3354.338 kb on + strand, within OLJFJH_15940at 3354.339 kb on - strand, within OLJFJH_15940at 3354.393 kb on + strand, within OLJFJH_15940at 3354.393 kb on + strand, within OLJFJH_15940at 3354.393 kb on + strand, within OLJFJH_15940at 3354.394 kb on - strand, within OLJFJH_15940at 3354.394 kb on - strand, within OLJFJH_15940at 3354.394 kb on - strand, within OLJFJH_15940at 3354.441 kb on - strand, within OLJFJH_15940at 3354.498 kb on + strand, within OLJFJH_15940at 3354.549 kb on + strand, within OLJFJH_15940at 3354.641 kb on + strand, within OLJFJH_15940at 3354.642 kb on - strand, within OLJFJH_15940at 3354.683 kb on + strand, within OLJFJH_15940at 3354.683 kb on + strand, within OLJFJH_15940at 3354.726 kb on - strandat 3354.751 kb on - strandat 3354.753 kb on - strandat 3354.753 kb on - strandat 3354.819 kb on + strandat 3354.877 kb on + strandat 3355.536 kb on + strand, within OLJFJH_15945at 3355.536 kb on + strand, within OLJFJH_15945at 3355.540 kb on + strand, within OLJFJH_15945at 3355.607 kb on + strand, within OLJFJH_15945at 3355.607 kb on + strand, within OLJFJH_15945at 3355.607 kb on + strand, within OLJFJH_15945at 3355.627 kb on + strand, within OLJFJH_15945at 3355.627 kb on + strand, within OLJFJH_15945at 3355.797 kb on + strand, within OLJFJH_15945at 3356.263 kb on + strand, within OLJFJH_15945at 3356.398 kb on + strand, within OLJFJH_15945at 3356.398 kb on + strand, within OLJFJH_15945at 3356.491 kb on + strand, within OLJFJH_15945at 3356.590 kb on + strandat 3356.592 kb on + strandat 3356.614 kb on + strandat 3357.531 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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3,354,188 + -0.8
3,354,188 + +0.1
3,354,188 + -0.6
3,354,244 - -2.1
3,354,252 + -1.7
3,354,338 + OLJFJH_15940 0.13 -0.1
3,354,338 + OLJFJH_15940 0.13 -0.2
3,354,339 - OLJFJH_15940 0.13 +0.2
3,354,393 + OLJFJH_15940 0.25 -0.6
3,354,393 + OLJFJH_15940 0.25 +0.7
3,354,393 + OLJFJH_15940 0.25 -2.8
3,354,394 - OLJFJH_15940 0.25 -0.9
3,354,394 - OLJFJH_15940 0.25 +1.3
3,354,394 - OLJFJH_15940 0.25 -0.1
3,354,441 - OLJFJH_15940 0.36 -2.3
3,354,498 + OLJFJH_15940 0.48 +1.0
3,354,549 + OLJFJH_15940 0.59 +0.4
3,354,641 + OLJFJH_15940 0.80 +0.2
3,354,642 - OLJFJH_15940 0.80 -0.0
3,354,683 + OLJFJH_15940 0.89 -0.4
3,354,683 + OLJFJH_15940 0.89 +0.3
3,354,726 - -1.0
3,354,751 - +0.9
3,354,753 - -0.3
3,354,753 - +0.5
3,354,819 + +0.6
3,354,877 + -3.5
3,355,536 + OLJFJH_15945 0.38 +0.0
3,355,536 + OLJFJH_15945 0.38 -2.4
3,355,540 + OLJFJH_15945 0.38 -3.5
3,355,607 + OLJFJH_15945 0.42 -0.6
3,355,607 + OLJFJH_15945 0.42 +0.4
3,355,607 + OLJFJH_15945 0.42 -0.4
3,355,627 + OLJFJH_15945 0.43 -1.8
3,355,627 + OLJFJH_15945 0.43 -1.1
3,355,797 + OLJFJH_15945 0.52 -1.4
3,356,263 + OLJFJH_15945 0.77 -2.0
3,356,398 + OLJFJH_15945 0.85 -1.2
3,356,398 + OLJFJH_15945 0.85 -2.1
3,356,491 + OLJFJH_15945 0.90 -1.2
3,356,590 + -0.9
3,356,592 + -0.2
3,356,614 + -1.2
3,357,531 - -0.3

Or see this region's nucleotide sequence