Strain Fitness in Erwinia amylovora T8 around OLJFJH_15100

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_15090 and OLJFJH_15095 overlap by 14 nucleotidesOLJFJH_15095 and OLJFJH_15100 are separated by 624 nucleotides OLJFJH_15090: OLJFJH_15090 - Conserved uncharacterized protein, at 3,185,765 to 3,186,454 _15090 OLJFJH_15095: OLJFJH_15095 - hypothetical protein, at 3,186,441 to 3,186,542 _15095 OLJFJH_15100: OLJFJH_15100 - transcriptional regulator, at 3,187,167 to 3,187,766 _15100 Position (kb) 3187 3188Strain fitness (log2 ratio) -1 0 1 2at 3186.342 kb on + strand, within OLJFJH_15090at 3186.578 kb on - strandat 3186.748 kb on + strandat 3186.769 kb on + strandat 3186.787 kb on - strandat 3186.808 kb on - strandat 3186.809 kb on + strandat 3187.016 kb on - strandat 3187.155 kb on + strandat 3187.168 kb on + strandat 3187.215 kb on + strandat 3187.412 kb on + strand, within OLJFJH_15100at 3187.847 kb on + strandat 3188.089 kb on + strandat 3188.116 kb on - strandat 3188.116 kb on - strandat 3188.311 kb on + strandat 3188.462 kb on - strandat 3188.631 kb on - strandat 3188.727 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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3,186,342 + OLJFJH_15090 0.84 +1.7
3,186,578 - +0.6
3,186,748 + +0.8
3,186,769 + -0.2
3,186,787 - -0.3
3,186,808 - +0.7
3,186,809 + +1.4
3,187,016 - +0.2
3,187,155 + +1.0
3,187,168 + +1.9
3,187,215 + -0.0
3,187,412 + OLJFJH_15100 0.41 -1.5
3,187,847 + +0.9
3,188,089 + -0.6
3,188,116 - +1.3
3,188,116 - +0.5
3,188,311 + -1.0
3,188,462 - -0.4
3,188,631 - +0.9
3,188,727 - -0.0

Or see this region's nucleotide sequence