Strain Fitness in Erwinia amylovora T8 around OLJFJH_14385

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_14375 and OLJFJH_14380 overlap by 1 nucleotidesOLJFJH_14380 and OLJFJH_14385 overlap by 8 nucleotidesOLJFJH_14385 and OLJFJH_14390 overlap by 4 nucleotidesOLJFJH_14390 and OLJFJH_14395 are separated by 91 nucleotides OLJFJH_14375: OLJFJH_14375 - electron transport complex subunit RsxD, at 3,038,542 to 3,039,603 _14375 OLJFJH_14380: OLJFJH_14380 - electron transport complex subunit RsxG, at 3,039,603 to 3,040,235 _14380 OLJFJH_14385: OLJFJH_14385 - electron transport complex subunit RsxE, at 3,040,228 to 3,040,929 _14385 OLJFJH_14390: OLJFJH_14390 - endonuclease III, at 3,040,926 to 3,041,561 _14390 OLJFJH_14395: OLJFJH_14395 - choline dehydrogenase, at 3,041,653 to 3,043,293 _14395 Position (kb) 3040 3041Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3039.423 kb on + strand, within OLJFJH_14375at 3039.559 kb on + strandat 3039.559 kb on + strandat 3039.559 kb on + strandat 3039.563 kb on - strandat 3039.916 kb on + strand, within OLJFJH_14380at 3040.670 kb on + strand, within OLJFJH_14385at 3040.838 kb on - strand, within OLJFJH_14385at 3041.086 kb on + strand, within OLJFJH_14390at 3041.148 kb on + strand, within OLJFJH_14390at 3041.149 kb on - strand, within OLJFJH_14390at 3041.149 kb on - strand, within OLJFJH_14390at 3041.149 kb on - strand, within OLJFJH_14390at 3041.178 kb on - strand, within OLJFJH_14390at 3041.178 kb on - strand, within OLJFJH_14390at 3041.178 kb on - strand, within OLJFJH_14390at 3041.275 kb on + strand, within OLJFJH_14390at 3041.282 kb on + strand, within OLJFJH_14390at 3041.345 kb on + strand, within OLJFJH_14390at 3041.346 kb on - strand, within OLJFJH_14390at 3041.385 kb on - strand, within OLJFJH_14390at 3041.393 kb on - strand, within OLJFJH_14390at 3041.478 kb on + strand, within OLJFJH_14390at 3041.666 kb on + strandat 3041.808 kb on + strandat 3041.809 kb on - strandat 3041.809 kb on - strandat 3041.816 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
remove
3,039,423 + OLJFJH_14375 0.83 +1.1
3,039,559 + +1.3
3,039,559 + +0.4
3,039,559 + +0.0
3,039,563 - -1.6
3,039,916 + OLJFJH_14380 0.49 -0.4
3,040,670 + OLJFJH_14385 0.63 -0.4
3,040,838 - OLJFJH_14385 0.87 -3.6
3,041,086 + OLJFJH_14390 0.25 +1.8
3,041,148 + OLJFJH_14390 0.35 -1.1
3,041,149 - OLJFJH_14390 0.35 +4.2
3,041,149 - OLJFJH_14390 0.35 +0.5
3,041,149 - OLJFJH_14390 0.35 +1.6
3,041,178 - OLJFJH_14390 0.40 +1.1
3,041,178 - OLJFJH_14390 0.40 -1.6
3,041,178 - OLJFJH_14390 0.40 +0.8
3,041,275 + OLJFJH_14390 0.55 +0.6
3,041,282 + OLJFJH_14390 0.56 +0.6
3,041,345 + OLJFJH_14390 0.66 -3.9
3,041,346 - OLJFJH_14390 0.66 +0.1
3,041,385 - OLJFJH_14390 0.72 -2.4
3,041,393 - OLJFJH_14390 0.73 -1.8
3,041,478 + OLJFJH_14390 0.87 +1.9
3,041,666 + +1.4
3,041,808 + -0.3
3,041,809 - +1.4
3,041,809 - -1.2
3,041,816 - -1.3

Or see this region's nucleotide sequence