Strain Fitness in Erwinia amylovora T8 around OLJFJH_14150

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_14140 and OLJFJH_14145 are separated by 123 nucleotidesOLJFJH_14145 and OLJFJH_14150 are separated by 112 nucleotidesOLJFJH_14150 and OLJFJH_14155 are separated by 271 nucleotides OLJFJH_14140: OLJFJH_14140 - 5'-nucleotidase lipoprotein e(P4) family, at 2,986,041 to 2,986,790 _14140 OLJFJH_14145: OLJFJH_14145 - GNAT family N-acetyltransferase, at 2,986,914 to 2,987,390 _14145 OLJFJH_14150: OLJFJH_14150 - osmotically-inducible lipoprotein B, at 2,987,503 to 2,987,712 _14150 OLJFJH_14155: OLJFJH_14155 - hypothetical protein, at 2,987,984 to 2,991,448 _14155 Position (kb) 2987 2988Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2986.782 kb on + strandat 2986.804 kb on - strandat 2986.833 kb on + strandat 2986.845 kb on - strandat 2986.870 kb on - strandat 2986.916 kb on - strandat 2987.051 kb on + strand, within OLJFJH_14145at 2987.051 kb on + strand, within OLJFJH_14145at 2987.198 kb on + strand, within OLJFJH_14145at 2987.297 kb on - strand, within OLJFJH_14145at 2987.368 kb on + strandat 2987.390 kb on + strandat 2987.433 kb on + strandat 2987.433 kb on + strandat 2987.433 kb on + strandat 2987.434 kb on - strandat 2987.434 kb on - strandat 2987.450 kb on + strandat 2987.450 kb on + strandat 2987.451 kb on - strandat 2987.451 kb on - strandat 2987.582 kb on - strand, within OLJFJH_14150at 2987.689 kb on - strand, within OLJFJH_14150at 2987.731 kb on + strandat 2987.735 kb on + strandat 2987.813 kb on - strandat 2988.095 kb on - strandat 2988.118 kb on + strandat 2988.119 kb on - strandat 2988.120 kb on + strandat 2988.120 kb on + strandat 2988.120 kb on + strandat 2988.121 kb on - strandat 2988.304 kb on - strandat 2988.539 kb on + strand, within OLJFJH_14155at 2988.592 kb on + strand, within OLJFJH_14155at 2988.594 kb on + strand, within OLJFJH_14155

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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2,986,782 + -1.5
2,986,804 - -3.7
2,986,833 + -1.8
2,986,845 - +4.2
2,986,870 - -0.7
2,986,916 - +1.7
2,987,051 + OLJFJH_14145 0.29 -0.9
2,987,051 + OLJFJH_14145 0.29 -0.2
2,987,198 + OLJFJH_14145 0.60 +0.9
2,987,297 - OLJFJH_14145 0.80 +1.8
2,987,368 + -1.6
2,987,390 + +1.9
2,987,433 + +1.8
2,987,433 + +2.2
2,987,433 + -0.2
2,987,434 - -1.2
2,987,434 - +0.7
2,987,450 + -3.2
2,987,450 + +0.1
2,987,451 - +0.1
2,987,451 - +1.9
2,987,582 - OLJFJH_14150 0.38 -2.8
2,987,689 - OLJFJH_14150 0.89 -1.2
2,987,731 + -2.4
2,987,735 + -0.0
2,987,813 - +1.1
2,988,095 - +0.4
2,988,118 + +1.3
2,988,119 - +0.5
2,988,120 + -1.3
2,988,120 + -0.1
2,988,120 + +0.2
2,988,121 - -2.7
2,988,304 - -1.0
2,988,539 + OLJFJH_14155 0.16 -0.2
2,988,592 + OLJFJH_14155 0.18 +0.9
2,988,594 + OLJFJH_14155 0.18 -1.7

Or see this region's nucleotide sequence