Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_13360 and OLJFJH_13365 are separated by 63 nucleotides OLJFJH_13365 and OLJFJH_13370 overlap by 4 nucleotides OLJFJH_13370 and OLJFJH_13375 overlap by 1 nucleotides
OLJFJH_13360: OLJFJH_13360 - LysR family transcriptional regulator, at 2,810,352 to 2,811,596
_13360
OLJFJH_13365: OLJFJH_13365 - type II 3-dehydroquinate dehydratase, at 2,811,660 to 2,812,088
_13365
OLJFJH_13370: OLJFJH_13370 - 2-pyrone-4 6-dicarboxylate hydrolase, at 2,812,085 to 2,812,921
_13370
OLJFJH_13375: OLJFJH_13375 - gallate dioxygenase, at 2,812,921 to 2,814,180
_13375
Position (kb)
2811
2812
2813 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2810.660 kb on + strand, within OLJFJH_13360 at 2810.660 kb on + strand, within OLJFJH_13360 at 2810.661 kb on - strand, within OLJFJH_13360 at 2810.702 kb on - strand, within OLJFJH_13360 at 2810.702 kb on - strand, within OLJFJH_13360 at 2810.702 kb on - strand, within OLJFJH_13360 at 2810.705 kb on + strand, within OLJFJH_13360 at 2810.821 kb on + strand, within OLJFJH_13360 at 2810.821 kb on + strand, within OLJFJH_13360 at 2811.182 kb on - strand, within OLJFJH_13360 at 2811.292 kb on + strand, within OLJFJH_13360 at 2811.365 kb on - strand, within OLJFJH_13360 at 2811.419 kb on - strand, within OLJFJH_13360 at 2811.559 kb on + strand at 2811.559 kb on + strand at 2811.560 kb on - strand at 2811.618 kb on + strand at 2811.745 kb on + strand, within OLJFJH_13365 at 2811.745 kb on + strand, within OLJFJH_13365 at 2812.022 kb on - strand, within OLJFJH_13365 at 2812.067 kb on + strand at 2812.075 kb on + strand at 2812.075 kb on + strand at 2812.075 kb on + strand at 2812.075 kb on + strand at 2812.076 kb on - strand at 2812.076 kb on - strand at 2812.089 kb on - strand at 2812.112 kb on - strand at 2812.250 kb on - strand, within OLJFJH_13370 at 2812.250 kb on - strand, within OLJFJH_13370 at 2812.685 kb on - strand, within OLJFJH_13370 at 2812.685 kb on - strand, within OLJFJH_13370 at 2812.738 kb on + strand, within OLJFJH_13370 at 2812.741 kb on - strand, within OLJFJH_13370 at 2812.843 kb on - strand at 2812.883 kb on + strand at 2812.883 kb on + strand at 2812.903 kb on + strand at 2812.916 kb on - strand at 2812.947 kb on - strand at 2813.009 kb on + strand at 2813.009 kb on + strand at 2813.009 kb on + strand at 2813.009 kb on + strand at 2813.010 kb on - strand at 2813.010 kb on - strand at 2813.014 kb on - strand at 2813.014 kb on - strand at 2813.076 kb on - strand, within OLJFJH_13375
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3 remove 2,810,660 + OLJFJH_13360 0.25 -0.5 2,810,660 + OLJFJH_13360 0.25 +0.6 2,810,661 - OLJFJH_13360 0.25 +0.4 2,810,702 - OLJFJH_13360 0.28 +1.1 2,810,702 - OLJFJH_13360 0.28 +0.7 2,810,702 - OLJFJH_13360 0.28 -0.4 2,810,705 + OLJFJH_13360 0.28 +0.3 2,810,821 + OLJFJH_13360 0.38 -0.5 2,810,821 + OLJFJH_13360 0.38 +2.2 2,811,182 - OLJFJH_13360 0.67 +1.8 2,811,292 + OLJFJH_13360 0.76 -1.0 2,811,365 - OLJFJH_13360 0.81 +0.7 2,811,419 - OLJFJH_13360 0.86 +0.5 2,811,559 + +1.5 2,811,559 + -0.9 2,811,560 - -2.3 2,811,618 + -0.4 2,811,745 + OLJFJH_13365 0.20 -2.3 2,811,745 + OLJFJH_13365 0.20 -0.4 2,812,022 - OLJFJH_13365 0.84 -1.7 2,812,067 + -0.0 2,812,075 + -0.7 2,812,075 + -2.1 2,812,075 + -1.4 2,812,075 + -2.1 2,812,076 - +0.5 2,812,076 - -2.0 2,812,089 - +2.9 2,812,112 - +1.2 2,812,250 - OLJFJH_13370 0.20 +0.9 2,812,250 - OLJFJH_13370 0.20 -0.9 2,812,685 - OLJFJH_13370 0.72 -0.5 2,812,685 - OLJFJH_13370 0.72 -0.2 2,812,738 + OLJFJH_13370 0.78 +1.0 2,812,741 - OLJFJH_13370 0.78 +0.3 2,812,843 - -1.7 2,812,883 + -0.8 2,812,883 + +0.6 2,812,903 + +0.3 2,812,916 - -0.6 2,812,947 - +1.5 2,813,009 + +0.4 2,813,009 + -2.4 2,813,009 + +0.4 2,813,009 + +1.5 2,813,010 - -1.2 2,813,010 - -1.6 2,813,014 - +0.1 2,813,014 - +2.2 2,813,076 - OLJFJH_13375 0.12 +2.4
Or see this region's nucleotide sequence