Strain Fitness in Erwinia amylovora T8 around OLJFJH_13365

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_13360 and OLJFJH_13365 are separated by 63 nucleotidesOLJFJH_13365 and OLJFJH_13370 overlap by 4 nucleotidesOLJFJH_13370 and OLJFJH_13375 overlap by 1 nucleotides OLJFJH_13360: OLJFJH_13360 - LysR family transcriptional regulator, at 2,810,352 to 2,811,596 _13360 OLJFJH_13365: OLJFJH_13365 - type II 3-dehydroquinate dehydratase, at 2,811,660 to 2,812,088 _13365 OLJFJH_13370: OLJFJH_13370 - 2-pyrone-4 6-dicarboxylate hydrolase, at 2,812,085 to 2,812,921 _13370 OLJFJH_13375: OLJFJH_13375 - gallate dioxygenase, at 2,812,921 to 2,814,180 _13375 Position (kb) 2811 2812 2813Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2810.660 kb on + strand, within OLJFJH_13360at 2810.660 kb on + strand, within OLJFJH_13360at 2810.661 kb on - strand, within OLJFJH_13360at 2810.702 kb on - strand, within OLJFJH_13360at 2810.702 kb on - strand, within OLJFJH_13360at 2810.702 kb on - strand, within OLJFJH_13360at 2810.705 kb on + strand, within OLJFJH_13360at 2810.821 kb on + strand, within OLJFJH_13360at 2810.821 kb on + strand, within OLJFJH_13360at 2811.182 kb on - strand, within OLJFJH_13360at 2811.292 kb on + strand, within OLJFJH_13360at 2811.365 kb on - strand, within OLJFJH_13360at 2811.419 kb on - strand, within OLJFJH_13360at 2811.559 kb on + strandat 2811.559 kb on + strandat 2811.560 kb on - strandat 2811.618 kb on + strandat 2811.745 kb on + strand, within OLJFJH_13365at 2811.745 kb on + strand, within OLJFJH_13365at 2812.022 kb on - strand, within OLJFJH_13365at 2812.067 kb on + strandat 2812.075 kb on + strandat 2812.075 kb on + strandat 2812.075 kb on + strandat 2812.075 kb on + strandat 2812.076 kb on - strandat 2812.076 kb on - strandat 2812.089 kb on - strandat 2812.112 kb on - strandat 2812.250 kb on - strand, within OLJFJH_13370at 2812.250 kb on - strand, within OLJFJH_13370at 2812.685 kb on - strand, within OLJFJH_13370at 2812.685 kb on - strand, within OLJFJH_13370at 2812.738 kb on + strand, within OLJFJH_13370at 2812.741 kb on - strand, within OLJFJH_13370at 2812.843 kb on - strandat 2812.883 kb on + strandat 2812.883 kb on + strandat 2812.903 kb on + strandat 2812.916 kb on - strandat 2812.947 kb on - strandat 2813.009 kb on + strandat 2813.009 kb on + strandat 2813.009 kb on + strandat 2813.009 kb on + strandat 2813.010 kb on - strandat 2813.010 kb on - strandat 2813.014 kb on - strandat 2813.014 kb on - strandat 2813.076 kb on - strand, within OLJFJH_13375

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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2,810,660 + OLJFJH_13360 0.25 -0.5
2,810,660 + OLJFJH_13360 0.25 +0.6
2,810,661 - OLJFJH_13360 0.25 +0.4
2,810,702 - OLJFJH_13360 0.28 +1.1
2,810,702 - OLJFJH_13360 0.28 +0.7
2,810,702 - OLJFJH_13360 0.28 -0.4
2,810,705 + OLJFJH_13360 0.28 +0.3
2,810,821 + OLJFJH_13360 0.38 -0.5
2,810,821 + OLJFJH_13360 0.38 +2.2
2,811,182 - OLJFJH_13360 0.67 +1.8
2,811,292 + OLJFJH_13360 0.76 -1.0
2,811,365 - OLJFJH_13360 0.81 +0.7
2,811,419 - OLJFJH_13360 0.86 +0.5
2,811,559 + +1.5
2,811,559 + -0.9
2,811,560 - -2.3
2,811,618 + -0.4
2,811,745 + OLJFJH_13365 0.20 -2.3
2,811,745 + OLJFJH_13365 0.20 -0.4
2,812,022 - OLJFJH_13365 0.84 -1.7
2,812,067 + -0.0
2,812,075 + -0.7
2,812,075 + -2.1
2,812,075 + -1.4
2,812,075 + -2.1
2,812,076 - +0.5
2,812,076 - -2.0
2,812,089 - +2.9
2,812,112 - +1.2
2,812,250 - OLJFJH_13370 0.20 +0.9
2,812,250 - OLJFJH_13370 0.20 -0.9
2,812,685 - OLJFJH_13370 0.72 -0.5
2,812,685 - OLJFJH_13370 0.72 -0.2
2,812,738 + OLJFJH_13370 0.78 +1.0
2,812,741 - OLJFJH_13370 0.78 +0.3
2,812,843 - -1.7
2,812,883 + -0.8
2,812,883 + +0.6
2,812,903 + +0.3
2,812,916 - -0.6
2,812,947 - +1.5
2,813,009 + +0.4
2,813,009 + -2.4
2,813,009 + +0.4
2,813,009 + +1.5
2,813,010 - -1.2
2,813,010 - -1.6
2,813,014 - +0.1
2,813,014 - +2.2
2,813,076 - OLJFJH_13375 0.12 +2.4

Or see this region's nucleotide sequence