Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_13345 and OLJFJH_13350 are separated by 1 nucleotides OLJFJH_13350 and OLJFJH_13355 overlap by 4 nucleotides OLJFJH_13355 and OLJFJH_13360 are separated by 128 nucleotides
OLJFJH_13345: OLJFJH_13345 - 4-oxalomesaconate tautomerase, at 2,807,683 to 2,808,771
_13345
OLJFJH_13350: OLJFJH_13350 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase, at 2,808,773 to 2,809,486
_13350
OLJFJH_13355: OLJFJH_13355 - 4-oxalmesaconate hydratase, at 2,809,483 to 2,810,223
_13355
OLJFJH_13360: OLJFJH_13360 - LysR family transcriptional regulator, at 2,810,352 to 2,811,596
_13360
Position (kb)
2808
2809
2810 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2808.481 kb on - strand, within OLJFJH_13345 at 2808.542 kb on + strand, within OLJFJH_13345 at 2808.542 kb on + strand, within OLJFJH_13345 at 2808.625 kb on + strand, within OLJFJH_13345 at 2808.665 kb on - strand at 2808.774 kb on + strand at 2808.774 kb on + strand at 2808.775 kb on - strand at 2808.775 kb on - strand at 2808.775 kb on - strand at 2808.804 kb on + strand at 2808.843 kb on + strand at 2808.844 kb on - strand at 2808.848 kb on - strand, within OLJFJH_13350 at 2809.069 kb on - strand, within OLJFJH_13350 at 2809.235 kb on - strand, within OLJFJH_13350 at 2809.235 kb on - strand, within OLJFJH_13350 at 2809.235 kb on - strand, within OLJFJH_13350 at 2809.235 kb on - strand, within OLJFJH_13350 at 2809.279 kb on + strand, within OLJFJH_13350 at 2809.280 kb on - strand, within OLJFJH_13350 at 2809.326 kb on + strand, within OLJFJH_13350 at 2809.361 kb on + strand, within OLJFJH_13350 at 2809.423 kb on + strand at 2809.569 kb on + strand, within OLJFJH_13355 at 2809.570 kb on - strand, within OLJFJH_13355 at 2809.610 kb on + strand, within OLJFJH_13355 at 2809.610 kb on + strand, within OLJFJH_13355 at 2809.610 kb on + strand, within OLJFJH_13355 at 2809.611 kb on - strand, within OLJFJH_13355 at 2809.613 kb on + strand, within OLJFJH_13355 at 2809.614 kb on - strand, within OLJFJH_13355 at 2809.614 kb on - strand, within OLJFJH_13355 at 2809.743 kb on - strand, within OLJFJH_13355 at 2809.844 kb on + strand, within OLJFJH_13355 at 2809.844 kb on + strand, within OLJFJH_13355 at 2809.845 kb on - strand, within OLJFJH_13355 at 2809.851 kb on - strand, within OLJFJH_13355 at 2810.276 kb on - strand at 2810.306 kb on + strand at 2810.306 kb on + strand at 2810.306 kb on + strand at 2810.311 kb on - strand at 2810.452 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3 remove 2,808,481 - OLJFJH_13345 0.73 -3.3 2,808,542 + OLJFJH_13345 0.79 -1.7 2,808,542 + OLJFJH_13345 0.79 -1.4 2,808,625 + OLJFJH_13345 0.87 +0.1 2,808,665 - -3.9 2,808,774 + -3.5 2,808,774 + +0.6 2,808,775 - -2.6 2,808,775 - -2.6 2,808,775 - -1.0 2,808,804 + -3.9 2,808,843 + -3.9 2,808,844 - -4.4 2,808,848 - OLJFJH_13350 0.11 -2.5 2,809,069 - OLJFJH_13350 0.41 -2.1 2,809,235 - OLJFJH_13350 0.65 -2.6 2,809,235 - OLJFJH_13350 0.65 -2.1 2,809,235 - OLJFJH_13350 0.65 -0.6 2,809,235 - OLJFJH_13350 0.65 -1.4 2,809,279 + OLJFJH_13350 0.71 -1.9 2,809,280 - OLJFJH_13350 0.71 -1.4 2,809,326 + OLJFJH_13350 0.77 -2.0 2,809,361 + OLJFJH_13350 0.82 -3.2 2,809,423 + -1.9 2,809,569 + OLJFJH_13355 0.12 -2.1 2,809,570 - OLJFJH_13355 0.12 -4.3 2,809,610 + OLJFJH_13355 0.17 -4.5 2,809,610 + OLJFJH_13355 0.17 -3.7 2,809,610 + OLJFJH_13355 0.17 -3.5 2,809,611 - OLJFJH_13355 0.17 -2.1 2,809,613 + OLJFJH_13355 0.18 -1.0 2,809,614 - OLJFJH_13355 0.18 -3.3 2,809,614 - OLJFJH_13355 0.18 -2.9 2,809,743 - OLJFJH_13355 0.35 -2.0 2,809,844 + OLJFJH_13355 0.49 -3.9 2,809,844 + OLJFJH_13355 0.49 -2.9 2,809,845 - OLJFJH_13355 0.49 -2.0 2,809,851 - OLJFJH_13355 0.50 -2.0 2,810,276 - -2.2 2,810,306 + -3.2 2,810,306 + -2.2 2,810,306 + -1.8 2,810,311 - +1.3 2,810,452 + -0.6
Or see this region's nucleotide sequence