Strain Fitness in Erwinia amylovora T8 around OLJFJH_12670

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_12665 and OLJFJH_12670 overlap by 1 nucleotidesOLJFJH_12670 and OLJFJH_12675 are separated by 8 nucleotides OLJFJH_12665: OLJFJH_12665 - glycosyl transferase, at 2,666,238 to 2,667,224 _12665 OLJFJH_12670: OLJFJH_12670 - flippase, at 2,667,224 to 2,668,522 _12670 OLJFJH_12675: OLJFJH_12675 - sodium:proton antiporter, at 2,668,531 to 2,669,865 _12675 Position (kb) 2667 2668 2669Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 2666.265 kb on - strandat 2666.351 kb on + strand, within OLJFJH_12665at 2666.401 kb on - strand, within OLJFJH_12665at 2666.401 kb on - strand, within OLJFJH_12665at 2666.495 kb on + strand, within OLJFJH_12665at 2666.859 kb on + strand, within OLJFJH_12665at 2667.023 kb on + strand, within OLJFJH_12665at 2667.056 kb on + strand, within OLJFJH_12665at 2667.066 kb on + strand, within OLJFJH_12665at 2667.153 kb on + strandat 2667.154 kb on - strandat 2667.194 kb on - strandat 2667.256 kb on - strandat 2667.279 kb on - strandat 2667.295 kb on + strandat 2667.295 kb on + strandat 2667.295 kb on + strandat 2667.350 kb on - strandat 2667.386 kb on + strand, within OLJFJH_12670at 2667.387 kb on - strand, within OLJFJH_12670at 2667.423 kb on - strand, within OLJFJH_12670at 2667.618 kb on + strand, within OLJFJH_12670at 2667.618 kb on + strand, within OLJFJH_12670at 2667.619 kb on - strand, within OLJFJH_12670at 2667.916 kb on + strand, within OLJFJH_12670at 2667.955 kb on + strand, within OLJFJH_12670at 2667.955 kb on + strand, within OLJFJH_12670at 2667.956 kb on - strand, within OLJFJH_12670at 2667.959 kb on + strand, within OLJFJH_12670at 2667.959 kb on + strand, within OLJFJH_12670at 2667.961 kb on + strand, within OLJFJH_12670at 2667.961 kb on + strand, within OLJFJH_12670at 2667.962 kb on - strand, within OLJFJH_12670at 2667.974 kb on + strand, within OLJFJH_12670at 2667.974 kb on + strand, within OLJFJH_12670at 2668.026 kb on + strand, within OLJFJH_12670at 2668.026 kb on + strand, within OLJFJH_12670at 2668.026 kb on + strand, within OLJFJH_12670at 2668.026 kb on + strand, within OLJFJH_12670at 2668.027 kb on - strand, within OLJFJH_12670at 2668.078 kb on + strand, within OLJFJH_12670at 2668.166 kb on + strand, within OLJFJH_12670at 2668.241 kb on - strand, within OLJFJH_12670at 2668.310 kb on - strand, within OLJFJH_12670at 2668.310 kb on - strand, within OLJFJH_12670at 2668.343 kb on - strand, within OLJFJH_12670at 2668.445 kb on - strandat 2668.472 kb on + strandat 2668.472 kb on + strandat 2668.472 kb on + strandat 2668.473 kb on - strandat 2668.564 kb on - strandat 2668.683 kb on + strand, within OLJFJH_12675at 2668.684 kb on - strand, within OLJFJH_12675at 2668.684 kb on - strand, within OLJFJH_12675at 2668.685 kb on + strand, within OLJFJH_12675at 2668.685 kb on + strand, within OLJFJH_12675at 2668.685 kb on + strand, within OLJFJH_12675at 2668.685 kb on + strand, within OLJFJH_12675at 2668.686 kb on - strand, within OLJFJH_12675at 2668.686 kb on - strand, within OLJFJH_12675at 2668.686 kb on - strand, within OLJFJH_12675at 2668.686 kb on - strand, within OLJFJH_12675at 2668.686 kb on - strand, within OLJFJH_12675at 2668.686 kb on - strand, within OLJFJH_12675at 2668.686 kb on - strand, within OLJFJH_12675at 2668.686 kb on - strand, within OLJFJH_12675at 2668.689 kb on + strand, within OLJFJH_12675at 2668.690 kb on - strand, within OLJFJH_12675at 2668.690 kb on - strand, within OLJFJH_12675at 2668.692 kb on + strand, within OLJFJH_12675at 2669.143 kb on - strand, within OLJFJH_12675at 2669.175 kb on + strand, within OLJFJH_12675at 2669.176 kb on - strand, within OLJFJH_12675at 2669.317 kb on + strand, within OLJFJH_12675at 2669.317 kb on + strand, within OLJFJH_12675

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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2,666,265 - -0.8
2,666,351 + OLJFJH_12665 0.11 -2.0
2,666,401 - OLJFJH_12665 0.17 +0.6
2,666,401 - OLJFJH_12665 0.17 +3.9
2,666,495 + OLJFJH_12665 0.26 +1.3
2,666,859 + OLJFJH_12665 0.63 +0.4
2,667,023 + OLJFJH_12665 0.80 +0.1
2,667,056 + OLJFJH_12665 0.83 -0.5
2,667,066 + OLJFJH_12665 0.84 +0.4
2,667,153 + +0.1
2,667,154 - -1.3
2,667,194 - -1.0
2,667,256 - -2.0
2,667,279 - -3.0
2,667,295 + -1.5
2,667,295 + -2.5
2,667,295 + -4.8
2,667,350 - -4.0
2,667,386 + OLJFJH_12670 0.12 -1.3
2,667,387 - OLJFJH_12670 0.13 -4.4
2,667,423 - OLJFJH_12670 0.15 -3.1
2,667,618 + OLJFJH_12670 0.30 -2.0
2,667,618 + OLJFJH_12670 0.30 -2.6
2,667,619 - OLJFJH_12670 0.30 -1.8
2,667,916 + OLJFJH_12670 0.53 -1.9
2,667,955 + OLJFJH_12670 0.56 -4.3
2,667,955 + OLJFJH_12670 0.56 -1.9
2,667,956 - OLJFJH_12670 0.56 -0.8
2,667,959 + OLJFJH_12670 0.57 -3.3
2,667,959 + OLJFJH_12670 0.57 -2.4
2,667,961 + OLJFJH_12670 0.57 -2.2
2,667,961 + OLJFJH_12670 0.57 -2.9
2,667,962 - OLJFJH_12670 0.57 -3.4
2,667,974 + OLJFJH_12670 0.58 -2.5
2,667,974 + OLJFJH_12670 0.58 -1.7
2,668,026 + OLJFJH_12670 0.62 -1.7
2,668,026 + OLJFJH_12670 0.62 -2.6
2,668,026 + OLJFJH_12670 0.62 -0.1
2,668,026 + OLJFJH_12670 0.62 -0.6
2,668,027 - OLJFJH_12670 0.62 -3.8
2,668,078 + OLJFJH_12670 0.66 -1.4
2,668,166 + OLJFJH_12670 0.73 -1.3
2,668,241 - OLJFJH_12670 0.78 -2.4
2,668,310 - OLJFJH_12670 0.84 -3.7
2,668,310 - OLJFJH_12670 0.84 -1.5
2,668,343 - OLJFJH_12670 0.86 -2.6
2,668,445 - -1.0
2,668,472 + +1.4
2,668,472 + -2.3
2,668,472 + -0.1
2,668,473 - -2.2
2,668,564 - +0.3
2,668,683 + OLJFJH_12675 0.11 +1.0
2,668,684 - OLJFJH_12675 0.11 -0.1
2,668,684 - OLJFJH_12675 0.11 +0.2
2,668,685 + OLJFJH_12675 0.12 -0.9
2,668,685 + OLJFJH_12675 0.12 +0.4
2,668,685 + OLJFJH_12675 0.12 +0.8
2,668,685 + OLJFJH_12675 0.12 +0.8
2,668,686 - OLJFJH_12675 0.12 +0.6
2,668,686 - OLJFJH_12675 0.12 -0.7
2,668,686 - OLJFJH_12675 0.12 +0.6
2,668,686 - OLJFJH_12675 0.12 -0.8
2,668,686 - OLJFJH_12675 0.12 +1.3
2,668,686 - OLJFJH_12675 0.12 +0.6
2,668,686 - OLJFJH_12675 0.12 -1.5
2,668,686 - OLJFJH_12675 0.12 -3.5
2,668,689 + OLJFJH_12675 0.12 +0.8
2,668,690 - OLJFJH_12675 0.12 +0.6
2,668,690 - OLJFJH_12675 0.12 -2.3
2,668,692 + OLJFJH_12675 0.12 +0.6
2,669,143 - OLJFJH_12675 0.46 -1.1
2,669,175 + OLJFJH_12675 0.48 -2.2
2,669,176 - OLJFJH_12675 0.48 +1.8
2,669,317 + OLJFJH_12675 0.59 -2.3
2,669,317 + OLJFJH_12675 0.59 +0.7

Or see this region's nucleotide sequence