Strain Fitness in Erwinia amylovora T8 around OLJFJH_12175

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_12170 and OLJFJH_12175 overlap by 4 nucleotidesOLJFJH_12175 and OLJFJH_12180 overlap by 4 nucleotides OLJFJH_12170: OLJFJH_12170 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 2,562,535 to 2,563,602 _12170 OLJFJH_12175: OLJFJH_12175 - histidinol-phosphate transaminase, at 2,563,599 to 2,564,690 _12175 OLJFJH_12180: OLJFJH_12180 - histidinol dehydrogenase, at 2,564,687 to 2,565,991 _12180 Position (kb) 2563 2564 2565Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2562.760 kb on - strand, within OLJFJH_12170at 2562.760 kb on - strand, within OLJFJH_12170at 2562.929 kb on + strand, within OLJFJH_12170at 2562.929 kb on + strand, within OLJFJH_12170at 2562.930 kb on - strand, within OLJFJH_12170at 2562.930 kb on - strand, within OLJFJH_12170at 2562.993 kb on + strand, within OLJFJH_12170at 2562.993 kb on + strand, within OLJFJH_12170at 2562.993 kb on + strand, within OLJFJH_12170at 2562.994 kb on - strand, within OLJFJH_12170at 2563.161 kb on - strand, within OLJFJH_12170at 2563.226 kb on + strand, within OLJFJH_12170at 2563.227 kb on - strand, within OLJFJH_12170at 2563.227 kb on - strand, within OLJFJH_12170at 2563.557 kb on + strandat 2563.557 kb on + strandat 2563.560 kb on + strandat 2563.560 kb on + strandat 2563.617 kb on + strandat 2563.618 kb on - strandat 2563.618 kb on - strandat 2563.618 kb on - strandat 2563.798 kb on + strand, within OLJFJH_12175at 2563.798 kb on + strand, within OLJFJH_12175at 2563.798 kb on + strand, within OLJFJH_12175at 2563.816 kb on + strand, within OLJFJH_12175at 2563.817 kb on - strand, within OLJFJH_12175at 2563.817 kb on - strand, within OLJFJH_12175at 2563.910 kb on + strand, within OLJFJH_12175at 2563.955 kb on + strand, within OLJFJH_12175at 2564.019 kb on - strand, within OLJFJH_12175at 2564.132 kb on + strand, within OLJFJH_12175at 2564.134 kb on + strand, within OLJFJH_12175at 2564.135 kb on - strand, within OLJFJH_12175at 2564.242 kb on + strand, within OLJFJH_12175at 2564.356 kb on + strand, within OLJFJH_12175at 2564.356 kb on + strand, within OLJFJH_12175at 2564.357 kb on - strand, within OLJFJH_12175at 2564.357 kb on - strand, within OLJFJH_12175at 2564.869 kb on + strand, within OLJFJH_12180at 2564.869 kb on + strand, within OLJFJH_12180at 2564.869 kb on + strand, within OLJFJH_12180at 2564.870 kb on - strand, within OLJFJH_12180at 2564.870 kb on - strand, within OLJFJH_12180at 2564.872 kb on - strand, within OLJFJH_12180at 2564.877 kb on + strand, within OLJFJH_12180at 2564.877 kb on + strand, within OLJFJH_12180at 2564.877 kb on + strand, within OLJFJH_12180at 2564.878 kb on - strand, within OLJFJH_12180at 2564.878 kb on - strand, within OLJFJH_12180at 2564.878 kb on - strand, within OLJFJH_12180at 2564.878 kb on - strand, within OLJFJH_12180at 2564.911 kb on - strand, within OLJFJH_12180at 2565.298 kb on + strand, within OLJFJH_12180at 2565.298 kb on + strand, within OLJFJH_12180at 2565.298 kb on + strand, within OLJFJH_12180at 2565.299 kb on - strand, within OLJFJH_12180at 2565.299 kb on - strand, within OLJFJH_12180at 2565.299 kb on - strand, within OLJFJH_12180at 2565.299 kb on - strand, within OLJFJH_12180at 2565.302 kb on + strand, within OLJFJH_12180at 2565.303 kb on - strand, within OLJFJH_12180at 2565.603 kb on + strand, within OLJFJH_12180at 2565.603 kb on + strand, within OLJFJH_12180at 2565.603 kb on + strand, within OLJFJH_12180at 2565.603 kb on + strand, within OLJFJH_12180at 2565.603 kb on + strand, within OLJFJH_12180at 2565.603 kb on + strand, within OLJFJH_12180at 2565.603 kb on + strand, within OLJFJH_12180at 2565.603 kb on + strand, within OLJFJH_12180at 2565.604 kb on - strand, within OLJFJH_12180at 2565.604 kb on - strand, within OLJFJH_12180at 2565.604 kb on - strand, within OLJFJH_12180at 2565.604 kb on - strand, within OLJFJH_12180at 2565.604 kb on - strand, within OLJFJH_12180at 2565.604 kb on - strand, within OLJFJH_12180at 2565.604 kb on - strand, within OLJFJH_12180

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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2,562,760 - OLJFJH_12170 0.21 -2.5
2,562,760 - OLJFJH_12170 0.21 -2.2
2,562,929 + OLJFJH_12170 0.37 -2.2
2,562,929 + OLJFJH_12170 0.37 -0.3
2,562,930 - OLJFJH_12170 0.37 -2.9
2,562,930 - OLJFJH_12170 0.37 -1.3
2,562,993 + OLJFJH_12170 0.43 -2.6
2,562,993 + OLJFJH_12170 0.43 -3.2
2,562,993 + OLJFJH_12170 0.43 -2.2
2,562,994 - OLJFJH_12170 0.43 -2.7
2,563,161 - OLJFJH_12170 0.59 -2.4
2,563,226 + OLJFJH_12170 0.65 -4.0
2,563,227 - OLJFJH_12170 0.65 -2.2
2,563,227 - OLJFJH_12170 0.65 -4.3
2,563,557 + -1.4
2,563,557 + -0.8
2,563,560 + -3.8
2,563,560 + -0.0
2,563,617 + -3.4
2,563,618 - +0.3
2,563,618 - -0.7
2,563,618 - +0.4
2,563,798 + OLJFJH_12175 0.18 -4.4
2,563,798 + OLJFJH_12175 0.18 -2.0
2,563,798 + OLJFJH_12175 0.18 -4.9
2,563,816 + OLJFJH_12175 0.20 -1.0
2,563,817 - OLJFJH_12175 0.20 -2.8
2,563,817 - OLJFJH_12175 0.20 -1.8
2,563,910 + OLJFJH_12175 0.28 -5.2
2,563,955 + OLJFJH_12175 0.33 -3.3
2,564,019 - OLJFJH_12175 0.38 -1.0
2,564,132 + OLJFJH_12175 0.49 -0.8
2,564,134 + OLJFJH_12175 0.49 -2.9
2,564,135 - OLJFJH_12175 0.49 -4.4
2,564,242 + OLJFJH_12175 0.59 -4.5
2,564,356 + OLJFJH_12175 0.69 -2.1
2,564,356 + OLJFJH_12175 0.69 -0.1
2,564,357 - OLJFJH_12175 0.69 -4.0
2,564,357 - OLJFJH_12175 0.69 -2.5
2,564,869 + OLJFJH_12180 0.14 -3.3
2,564,869 + OLJFJH_12180 0.14 -3.2
2,564,869 + OLJFJH_12180 0.14 -3.2
2,564,870 - OLJFJH_12180 0.14 -1.2
2,564,870 - OLJFJH_12180 0.14 -4.9
2,564,872 - OLJFJH_12180 0.14 -4.4
2,564,877 + OLJFJH_12180 0.15 -0.6
2,564,877 + OLJFJH_12180 0.15 -1.5
2,564,877 + OLJFJH_12180 0.15 -3.4
2,564,878 - OLJFJH_12180 0.15 -3.9
2,564,878 - OLJFJH_12180 0.15 -2.1
2,564,878 - OLJFJH_12180 0.15 -3.1
2,564,878 - OLJFJH_12180 0.15 -3.2
2,564,911 - OLJFJH_12180 0.17 -3.9
2,565,298 + OLJFJH_12180 0.47 -2.3
2,565,298 + OLJFJH_12180 0.47 -2.7
2,565,298 + OLJFJH_12180 0.47 -0.8
2,565,299 - OLJFJH_12180 0.47 -3.4
2,565,299 - OLJFJH_12180 0.47 -2.8
2,565,299 - OLJFJH_12180 0.47 -3.9
2,565,299 - OLJFJH_12180 0.47 +0.2
2,565,302 + OLJFJH_12180 0.47 -2.7
2,565,303 - OLJFJH_12180 0.47 -3.5
2,565,603 + OLJFJH_12180 0.70 -2.8
2,565,603 + OLJFJH_12180 0.70 -2.8
2,565,603 + OLJFJH_12180 0.70 -2.0
2,565,603 + OLJFJH_12180 0.70 -2.2
2,565,603 + OLJFJH_12180 0.70 -0.1
2,565,603 + OLJFJH_12180 0.70 -2.4
2,565,603 + OLJFJH_12180 0.70 -4.6
2,565,603 + OLJFJH_12180 0.70 -2.8
2,565,604 - OLJFJH_12180 0.70 -5.7
2,565,604 - OLJFJH_12180 0.70 -4.3
2,565,604 - OLJFJH_12180 0.70 -2.3
2,565,604 - OLJFJH_12180 0.70 -1.3
2,565,604 - OLJFJH_12180 0.70 -2.3
2,565,604 - OLJFJH_12180 0.70 -1.8
2,565,604 - OLJFJH_12180 0.70 -2.6

Or see this region's nucleotide sequence