Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_11915 and OLJFJH_11920 are separated by 389 nucleotides OLJFJH_11920 and OLJFJH_11925 are separated by 350 nucleotides OLJFJH_11925 and OLJFJH_11930 overlap by 4 nucleotides OLJFJH_11930 and OLJFJH_11935 are separated by 133 nucleotides
OLJFJH_11915: OLJFJH_11915 - chorismate mutase, at 2,499,352 to 2,499,903
_11915
OLJFJH_11920: OLJFJH_11920 - hypothetical protein, at 2,500,293 to 2,500,502
_11920
OLJFJH_11925: OLJFJH_11925 - hydroxyethylthiazole kinase, at 2,500,853 to 2,501,689
_11925
OLJFJH_11930: OLJFJH_11930 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 2,501,686 to 2,502,486
_11930
OLJFJH_11935: OLJFJH_11935 - lipid kinase YegS, at 2,502,620 to 2,503,522
_11935
Position (kb)
2500
2501
2502 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2499.897 kb on + strand at 2499.897 kb on + strand at 2499.897 kb on + strand at 2499.902 kb on - strand at 2500.115 kb on - strand at 2500.129 kb on + strand at 2500.208 kb on + strand at 2500.217 kb on + strand at 2500.287 kb on - strand at 2500.287 kb on - strand at 2500.287 kb on - strand at 2500.292 kb on + strand at 2500.301 kb on - strand at 2500.314 kb on + strand, within OLJFJH_11920 at 2500.501 kb on - strand at 2500.552 kb on + strand at 2500.552 kb on + strand at 2500.553 kb on - strand at 2500.553 kb on - strand at 2500.559 kb on + strand at 2500.664 kb on + strand at 2500.752 kb on - strand at 2500.755 kb on - strand at 2501.293 kb on + strand, within OLJFJH_11925 at 2501.449 kb on - strand, within OLJFJH_11925 at 2501.694 kb on + strand at 2501.695 kb on - strand at 2501.695 kb on - strand at 2501.695 kb on - strand at 2501.832 kb on - strand, within OLJFJH_11930 at 2501.832 kb on - strand, within OLJFJH_11930 at 2501.832 kb on - strand, within OLJFJH_11930 at 2502.122 kb on + strand, within OLJFJH_11930 at 2502.126 kb on + strand, within OLJFJH_11930 at 2502.127 kb on - strand, within OLJFJH_11930 at 2502.306 kb on + strand, within OLJFJH_11930 at 2502.367 kb on - strand, within OLJFJH_11930 at 2502.378 kb on + strand, within OLJFJH_11930 at 2502.473 kb on - strand at 2502.485 kb on - strand at 2502.595 kb on + strand at 2502.595 kb on + strand at 2502.597 kb on + strand at 2502.597 kb on + strand at 2502.597 kb on + strand at 2502.598 kb on - strand at 2502.598 kb on - strand at 2502.598 kb on - strand at 2502.621 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3 remove 2,499,897 + -1.0 2,499,897 + -0.0 2,499,897 + -2.1 2,499,902 - +1.4 2,500,115 - -0.2 2,500,129 + +0.5 2,500,208 + -0.4 2,500,217 + -1.6 2,500,287 - +0.2 2,500,287 - -0.4 2,500,287 - -0.9 2,500,292 + +0.2 2,500,301 - +0.6 2,500,314 + OLJFJH_11920 0.10 +4.4 2,500,501 - -1.8 2,500,552 + +0.2 2,500,552 + +0.1 2,500,553 - +2.0 2,500,553 - -1.0 2,500,559 + -0.1 2,500,664 + +0.8 2,500,752 - -0.8 2,500,755 - -0.4 2,501,293 + OLJFJH_11925 0.53 -1.0 2,501,449 - OLJFJH_11925 0.71 -1.2 2,501,694 + -0.7 2,501,695 - +0.9 2,501,695 - -2.4 2,501,695 - +1.1 2,501,832 - OLJFJH_11930 0.18 -0.3 2,501,832 - OLJFJH_11930 0.18 -0.7 2,501,832 - OLJFJH_11930 0.18 -0.5 2,502,122 + OLJFJH_11930 0.54 +0.0 2,502,126 + OLJFJH_11930 0.55 +0.1 2,502,127 - OLJFJH_11930 0.55 -1.4 2,502,306 + OLJFJH_11930 0.77 +0.1 2,502,367 - OLJFJH_11930 0.85 -2.0 2,502,378 + OLJFJH_11930 0.86 -0.7 2,502,473 - -0.3 2,502,485 - -0.0 2,502,595 + +0.0 2,502,595 + +0.9 2,502,597 + +0.2 2,502,597 + +0.1 2,502,597 + -1.0 2,502,598 - +2.8 2,502,598 - +0.2 2,502,598 - +1.1 2,502,621 + +0.3
Or see this region's nucleotide sequence