Strain Fitness in Erwinia amylovora T8 around OLJFJH_11925

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_11915 and OLJFJH_11920 are separated by 389 nucleotidesOLJFJH_11920 and OLJFJH_11925 are separated by 350 nucleotidesOLJFJH_11925 and OLJFJH_11930 overlap by 4 nucleotidesOLJFJH_11930 and OLJFJH_11935 are separated by 133 nucleotides OLJFJH_11915: OLJFJH_11915 - chorismate mutase, at 2,499,352 to 2,499,903 _11915 OLJFJH_11920: OLJFJH_11920 - hypothetical protein, at 2,500,293 to 2,500,502 _11920 OLJFJH_11925: OLJFJH_11925 - hydroxyethylthiazole kinase, at 2,500,853 to 2,501,689 _11925 OLJFJH_11930: OLJFJH_11930 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 2,501,686 to 2,502,486 _11930 OLJFJH_11935: OLJFJH_11935 - lipid kinase YegS, at 2,502,620 to 2,503,522 _11935 Position (kb) 2500 2501 2502Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2499.897 kb on + strandat 2499.897 kb on + strandat 2499.897 kb on + strandat 2499.902 kb on - strandat 2500.115 kb on - strandat 2500.129 kb on + strandat 2500.208 kb on + strandat 2500.217 kb on + strandat 2500.287 kb on - strandat 2500.287 kb on - strandat 2500.287 kb on - strandat 2500.292 kb on + strandat 2500.301 kb on - strandat 2500.314 kb on + strand, within OLJFJH_11920at 2500.501 kb on - strandat 2500.552 kb on + strandat 2500.552 kb on + strandat 2500.553 kb on - strandat 2500.553 kb on - strandat 2500.559 kb on + strandat 2500.664 kb on + strandat 2500.752 kb on - strandat 2500.755 kb on - strandat 2501.293 kb on + strand, within OLJFJH_11925at 2501.449 kb on - strand, within OLJFJH_11925at 2501.694 kb on + strandat 2501.695 kb on - strandat 2501.695 kb on - strandat 2501.695 kb on - strandat 2501.832 kb on - strand, within OLJFJH_11930at 2501.832 kb on - strand, within OLJFJH_11930at 2501.832 kb on - strand, within OLJFJH_11930at 2502.122 kb on + strand, within OLJFJH_11930at 2502.126 kb on + strand, within OLJFJH_11930at 2502.127 kb on - strand, within OLJFJH_11930at 2502.306 kb on + strand, within OLJFJH_11930at 2502.367 kb on - strand, within OLJFJH_11930at 2502.378 kb on + strand, within OLJFJH_11930at 2502.473 kb on - strandat 2502.485 kb on - strandat 2502.595 kb on + strandat 2502.595 kb on + strandat 2502.597 kb on + strandat 2502.597 kb on + strandat 2502.597 kb on + strandat 2502.598 kb on - strandat 2502.598 kb on - strandat 2502.598 kb on - strandat 2502.621 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
remove
2,499,897 + -1.0
2,499,897 + -0.0
2,499,897 + -2.1
2,499,902 - +1.4
2,500,115 - -0.2
2,500,129 + +0.5
2,500,208 + -0.4
2,500,217 + -1.6
2,500,287 - +0.2
2,500,287 - -0.4
2,500,287 - -0.9
2,500,292 + +0.2
2,500,301 - +0.6
2,500,314 + OLJFJH_11920 0.10 +4.4
2,500,501 - -1.8
2,500,552 + +0.2
2,500,552 + +0.1
2,500,553 - +2.0
2,500,553 - -1.0
2,500,559 + -0.1
2,500,664 + +0.8
2,500,752 - -0.8
2,500,755 - -0.4
2,501,293 + OLJFJH_11925 0.53 -1.0
2,501,449 - OLJFJH_11925 0.71 -1.2
2,501,694 + -0.7
2,501,695 - +0.9
2,501,695 - -2.4
2,501,695 - +1.1
2,501,832 - OLJFJH_11930 0.18 -0.3
2,501,832 - OLJFJH_11930 0.18 -0.7
2,501,832 - OLJFJH_11930 0.18 -0.5
2,502,122 + OLJFJH_11930 0.54 +0.0
2,502,126 + OLJFJH_11930 0.55 +0.1
2,502,127 - OLJFJH_11930 0.55 -1.4
2,502,306 + OLJFJH_11930 0.77 +0.1
2,502,367 - OLJFJH_11930 0.85 -2.0
2,502,378 + OLJFJH_11930 0.86 -0.7
2,502,473 - -0.3
2,502,485 - -0.0
2,502,595 + +0.0
2,502,595 + +0.9
2,502,597 + +0.2
2,502,597 + +0.1
2,502,597 + -1.0
2,502,598 - +2.8
2,502,598 - +0.2
2,502,598 - +1.1
2,502,621 + +0.3

Or see this region's nucleotide sequence