Strain Fitness in Erwinia amylovora T8 around OLJFJH_11455

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_11445 and OLJFJH_11450 are separated by 10 nucleotidesOLJFJH_11450 and OLJFJH_11455 overlap by 4 nucleotidesOLJFJH_11455 and OLJFJH_11460 overlap by 4 nucleotides OLJFJH_11445: OLJFJH_11445 - NADH-quinone oxidoreductase subunit NuoI, at 2,388,976 to 2,389,518 _11445 OLJFJH_11450: OLJFJH_11450 - NADH-quinone oxidoreductase subunit J, at 2,389,529 to 2,390,083 _11450 OLJFJH_11455: OLJFJH_11455 - NADH-quinone oxidoreductase subunit NuoK, at 2,390,080 to 2,390,382 _11455 OLJFJH_11460: OLJFJH_11460 - NADH-quinone oxidoreductase subunit L, at 2,390,379 to 2,392,217 _11460 Position (kb) 2390 2391Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2389.090 kb on + strand, within OLJFJH_11445at 2389.351 kb on - strand, within OLJFJH_11445at 2389.369 kb on + strand, within OLJFJH_11445at 2389.369 kb on + strand, within OLJFJH_11445at 2389.418 kb on - strand, within OLJFJH_11445at 2389.419 kb on + strand, within OLJFJH_11445at 2389.420 kb on - strand, within OLJFJH_11445at 2389.511 kb on + strandat 2389.545 kb on - strandat 2389.606 kb on - strand, within OLJFJH_11450at 2389.620 kb on - strand, within OLJFJH_11450at 2389.674 kb on - strand, within OLJFJH_11450at 2389.696 kb on + strand, within OLJFJH_11450at 2389.718 kb on - strand, within OLJFJH_11450at 2389.853 kb on + strand, within OLJFJH_11450at 2389.853 kb on + strand, within OLJFJH_11450at 2389.854 kb on - strand, within OLJFJH_11450at 2389.854 kb on - strand, within OLJFJH_11450at 2389.854 kb on - strand, within OLJFJH_11450at 2389.938 kb on - strand, within OLJFJH_11450at 2389.938 kb on - strand, within OLJFJH_11450at 2390.063 kb on - strandat 2390.103 kb on + strandat 2390.104 kb on - strandat 2390.170 kb on - strand, within OLJFJH_11455at 2390.233 kb on + strand, within OLJFJH_11455at 2390.391 kb on + strandat 2390.395 kb on + strandat 2390.395 kb on + strandat 2390.518 kb on - strandat 2390.678 kb on + strand, within OLJFJH_11460at 2390.678 kb on + strand, within OLJFJH_11460at 2390.678 kb on + strand, within OLJFJH_11460at 2390.679 kb on - strand, within OLJFJH_11460at 2390.679 kb on - strand, within OLJFJH_11460at 2390.679 kb on - strand, within OLJFJH_11460at 2390.694 kb on + strand, within OLJFJH_11460at 2390.694 kb on + strand, within OLJFJH_11460at 2390.694 kb on + strand, within OLJFJH_11460at 2390.694 kb on + strand, within OLJFJH_11460at 2390.695 kb on - strand, within OLJFJH_11460at 2390.695 kb on - strand, within OLJFJH_11460at 2390.696 kb on + strand, within OLJFJH_11460at 2390.696 kb on + strand, within OLJFJH_11460at 2390.696 kb on + strand, within OLJFJH_11460at 2390.697 kb on - strand, within OLJFJH_11460at 2390.697 kb on - strand, within OLJFJH_11460at 2390.697 kb on - strand, within OLJFJH_11460at 2390.697 kb on - strand, within OLJFJH_11460at 2390.715 kb on + strand, within OLJFJH_11460at 2390.736 kb on - strand, within OLJFJH_11460at 2390.796 kb on + strand, within OLJFJH_11460at 2390.796 kb on + strand, within OLJFJH_11460at 2390.796 kb on + strand, within OLJFJH_11460at 2390.797 kb on - strand, within OLJFJH_11460at 2390.829 kb on + strand, within OLJFJH_11460at 2390.829 kb on + strand, within OLJFJH_11460at 2390.829 kb on + strand, within OLJFJH_11460at 2390.830 kb on - strand, within OLJFJH_11460at 2390.830 kb on - strand, within OLJFJH_11460at 2390.830 kb on - strand, within OLJFJH_11460at 2390.847 kb on + strand, within OLJFJH_11460at 2390.848 kb on - strand, within OLJFJH_11460at 2390.850 kb on + strand, within OLJFJH_11460at 2390.850 kb on + strand, within OLJFJH_11460at 2390.851 kb on - strand, within OLJFJH_11460at 2390.943 kb on + strand, within OLJFJH_11460at 2391.017 kb on + strand, within OLJFJH_11460at 2391.017 kb on + strand, within OLJFJH_11460at 2391.017 kb on + strand, within OLJFJH_11460at 2391.017 kb on + strand, within OLJFJH_11460at 2391.017 kb on + strand, within OLJFJH_11460at 2391.017 kb on + strand, within OLJFJH_11460at 2391.018 kb on - strand, within OLJFJH_11460at 2391.018 kb on - strand, within OLJFJH_11460at 2391.018 kb on - strand, within OLJFJH_11460at 2391.306 kb on + strand, within OLJFJH_11460at 2391.331 kb on - strand, within OLJFJH_11460at 2391.332 kb on + strand, within OLJFJH_11460at 2391.332 kb on + strand, within OLJFJH_11460at 2391.332 kb on + strand, within OLJFJH_11460at 2391.332 kb on + strand, within OLJFJH_11460at 2391.332 kb on + strand, within OLJFJH_11460at 2391.333 kb on - strand, within OLJFJH_11460at 2391.333 kb on - strand, within OLJFJH_11460at 2391.333 kb on - strand, within OLJFJH_11460

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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2,389,090 + OLJFJH_11445 0.21 -1.5
2,389,351 - OLJFJH_11445 0.69 -0.8
2,389,369 + OLJFJH_11445 0.72 -1.7
2,389,369 + OLJFJH_11445 0.72 -3.7
2,389,418 - OLJFJH_11445 0.81 -3.2
2,389,419 + OLJFJH_11445 0.82 +0.8
2,389,420 - OLJFJH_11445 0.82 +2.1
2,389,511 + +1.9
2,389,545 - -0.7
2,389,606 - OLJFJH_11450 0.14 +0.2
2,389,620 - OLJFJH_11450 0.16 -0.6
2,389,674 - OLJFJH_11450 0.26 -2.0
2,389,696 + OLJFJH_11450 0.30 -1.3
2,389,718 - OLJFJH_11450 0.34 -0.5
2,389,853 + OLJFJH_11450 0.58 -2.0
2,389,853 + OLJFJH_11450 0.58 -0.4
2,389,854 - OLJFJH_11450 0.59 -0.8
2,389,854 - OLJFJH_11450 0.59 -2.5
2,389,854 - OLJFJH_11450 0.59 -1.5
2,389,938 - OLJFJH_11450 0.74 +1.3
2,389,938 - OLJFJH_11450 0.74 -1.1
2,390,063 - -1.0
2,390,103 + -1.3
2,390,104 - -2.3
2,390,170 - OLJFJH_11455 0.30 -2.3
2,390,233 + OLJFJH_11455 0.50 -2.5
2,390,391 + -0.7
2,390,395 + -2.3
2,390,395 + +0.6
2,390,518 - -2.5
2,390,678 + OLJFJH_11460 0.16 -0.8
2,390,678 + OLJFJH_11460 0.16 -2.9
2,390,678 + OLJFJH_11460 0.16 -1.2
2,390,679 - OLJFJH_11460 0.16 -0.4
2,390,679 - OLJFJH_11460 0.16 -0.5
2,390,679 - OLJFJH_11460 0.16 -0.2
2,390,694 + OLJFJH_11460 0.17 -0.6
2,390,694 + OLJFJH_11460 0.17 -2.3
2,390,694 + OLJFJH_11460 0.17 -0.6
2,390,694 + OLJFJH_11460 0.17 -2.1
2,390,695 - OLJFJH_11460 0.17 +1.7
2,390,695 - OLJFJH_11460 0.17 -0.7
2,390,696 + OLJFJH_11460 0.17 -1.0
2,390,696 + OLJFJH_11460 0.17 -0.4
2,390,696 + OLJFJH_11460 0.17 -0.8
2,390,697 - OLJFJH_11460 0.17 -2.5
2,390,697 - OLJFJH_11460 0.17 -0.3
2,390,697 - OLJFJH_11460 0.17 +0.6
2,390,697 - OLJFJH_11460 0.17 +0.6
2,390,715 + OLJFJH_11460 0.18 -1.7
2,390,736 - OLJFJH_11460 0.19 -1.1
2,390,796 + OLJFJH_11460 0.23 -1.9
2,390,796 + OLJFJH_11460 0.23 -0.8
2,390,796 + OLJFJH_11460 0.23 -0.4
2,390,797 - OLJFJH_11460 0.23 -1.0
2,390,829 + OLJFJH_11460 0.24 +0.5
2,390,829 + OLJFJH_11460 0.24 -0.6
2,390,829 + OLJFJH_11460 0.24 -1.6
2,390,830 - OLJFJH_11460 0.25 -0.0
2,390,830 - OLJFJH_11460 0.25 -2.6
2,390,830 - OLJFJH_11460 0.25 +0.2
2,390,847 + OLJFJH_11460 0.25 -0.8
2,390,848 - OLJFJH_11460 0.26 -0.4
2,390,850 + OLJFJH_11460 0.26 -1.1
2,390,850 + OLJFJH_11460 0.26 -1.1
2,390,851 - OLJFJH_11460 0.26 -1.5
2,390,943 + OLJFJH_11460 0.31 -3.6
2,391,017 + OLJFJH_11460 0.35 -3.7
2,391,017 + OLJFJH_11460 0.35 -1.6
2,391,017 + OLJFJH_11460 0.35 -1.0
2,391,017 + OLJFJH_11460 0.35 -0.6
2,391,017 + OLJFJH_11460 0.35 -2.5
2,391,017 + OLJFJH_11460 0.35 -0.7
2,391,018 - OLJFJH_11460 0.35 -1.4
2,391,018 - OLJFJH_11460 0.35 -0.4
2,391,018 - OLJFJH_11460 0.35 -0.8
2,391,306 + OLJFJH_11460 0.50 -0.4
2,391,331 - OLJFJH_11460 0.52 -1.3
2,391,332 + OLJFJH_11460 0.52 -2.6
2,391,332 + OLJFJH_11460 0.52 -0.8
2,391,332 + OLJFJH_11460 0.52 -2.3
2,391,332 + OLJFJH_11460 0.52 -1.3
2,391,332 + OLJFJH_11460 0.52 -1.3
2,391,333 - OLJFJH_11460 0.52 -2.4
2,391,333 - OLJFJH_11460 0.52 -0.8
2,391,333 - OLJFJH_11460 0.52 -1.2

Or see this region's nucleotide sequence