Strain Fitness in Erwinia amylovora T8 around OLJFJH_10665

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_10655 and OLJFJH_10660 are separated by 8 nucleotidesOLJFJH_10660 and OLJFJH_10665 are separated by 11 nucleotidesOLJFJH_10665 and OLJFJH_10670 are separated by 477 nucleotidesOLJFJH_10670 and OLJFJH_10675 are separated by 54 nucleotides OLJFJH_10655: OLJFJH_10655 - tRNA cytosine(34) acetyltransferase TmcA, at 2,205,709 to 2,207,604 _10655 OLJFJH_10660: OLJFJH_10660 - hypothetical protein, at 2,207,613 to 2,207,729 _10660 OLJFJH_10665: OLJFJH_10665 - hypothetical protein, at 2,207,741 to 2,207,905 _10665 OLJFJH_10670: OLJFJH_10670 - SymE-toxin domain-containing protein, at 2,208,383 to 2,208,676 _10670 OLJFJH_10675: OLJFJH_10675 - hypothetical protein, at 2,208,731 to 2,209,048 _10675 Position (kb) 2207 2208Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2207.428 kb on + strandat 2207.625 kb on + strand, within OLJFJH_10660at 2207.866 kb on + strand, within OLJFJH_10665at 2207.867 kb on - strand, within OLJFJH_10665at 2207.867 kb on - strand, within OLJFJH_10665at 2207.869 kb on - strand, within OLJFJH_10665at 2207.869 kb on - strand, within OLJFJH_10665at 2207.869 kb on - strand, within OLJFJH_10665at 2208.019 kb on + strandat 2208.020 kb on - strandat 2208.476 kb on - strand, within OLJFJH_10670at 2208.691 kb on + strandat 2208.737 kb on - strandat 2208.817 kb on - strand, within OLJFJH_10675at 2208.852 kb on + strand, within OLJFJH_10675

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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2,207,428 + -1.5
2,207,625 + OLJFJH_10660 0.10 +0.3
2,207,866 + OLJFJH_10665 0.76 -2.2
2,207,867 - OLJFJH_10665 0.76 -0.7
2,207,867 - OLJFJH_10665 0.76 -0.4
2,207,869 - OLJFJH_10665 0.78 -1.4
2,207,869 - OLJFJH_10665 0.78 -1.6
2,207,869 - OLJFJH_10665 0.78 -0.1
2,208,019 + -1.7
2,208,020 - -2.7
2,208,476 - OLJFJH_10670 0.32 -1.1
2,208,691 + -0.1
2,208,737 - -2.9
2,208,817 - OLJFJH_10675 0.27 +0.0
2,208,852 + OLJFJH_10675 0.38 +2.4

Or see this region's nucleotide sequence