Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_10655 and OLJFJH_10660 are separated by 8 nucleotides OLJFJH_10660 and OLJFJH_10665 are separated by 11 nucleotides OLJFJH_10665 and OLJFJH_10670 are separated by 477 nucleotides OLJFJH_10670 and OLJFJH_10675 are separated by 54 nucleotides
OLJFJH_10655: OLJFJH_10655 - tRNA cytosine(34) acetyltransferase TmcA, at 2,205,709 to 2,207,604
_10655
OLJFJH_10660: OLJFJH_10660 - hypothetical protein, at 2,207,613 to 2,207,729
_10660
OLJFJH_10665: OLJFJH_10665 - hypothetical protein, at 2,207,741 to 2,207,905
_10665
OLJFJH_10670: OLJFJH_10670 - SymE-toxin domain-containing protein, at 2,208,383 to 2,208,676
_10670
OLJFJH_10675: OLJFJH_10675 - hypothetical protein, at 2,208,731 to 2,209,048
_10675
Position (kb)
2207
2208 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2207.428 kb on + strand at 2207.625 kb on + strand, within OLJFJH_10660 at 2207.866 kb on + strand, within OLJFJH_10665 at 2207.867 kb on - strand, within OLJFJH_10665 at 2207.867 kb on - strand, within OLJFJH_10665 at 2207.869 kb on - strand, within OLJFJH_10665 at 2207.869 kb on - strand, within OLJFJH_10665 at 2207.869 kb on - strand, within OLJFJH_10665 at 2208.019 kb on + strand at 2208.020 kb on - strand at 2208.476 kb on - strand, within OLJFJH_10670 at 2208.691 kb on + strand at 2208.737 kb on - strand at 2208.817 kb on - strand, within OLJFJH_10675 at 2208.852 kb on + strand, within OLJFJH_10675
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3 remove 2,207,428 + -1.5 2,207,625 + OLJFJH_10660 0.10 +0.3 2,207,866 + OLJFJH_10665 0.76 -2.2 2,207,867 - OLJFJH_10665 0.76 -0.7 2,207,867 - OLJFJH_10665 0.76 -0.4 2,207,869 - OLJFJH_10665 0.78 -1.4 2,207,869 - OLJFJH_10665 0.78 -1.6 2,207,869 - OLJFJH_10665 0.78 -0.1 2,208,019 + -1.7 2,208,020 - -2.7 2,208,476 - OLJFJH_10670 0.32 -1.1 2,208,691 + -0.1 2,208,737 - -2.9 2,208,817 - OLJFJH_10675 0.27 +0.0 2,208,852 + OLJFJH_10675 0.38 +2.4
Or see this region's nucleotide sequence