Strain Fitness in Erwinia amylovora T8 around OLJFJH_10465

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_10455 and OLJFJH_10460 are separated by 37 nucleotidesOLJFJH_10460 and OLJFJH_10465 are separated by 128 nucleotidesOLJFJH_10465 and OLJFJH_10470 are separated by 212 nucleotides OLJFJH_10455: OLJFJH_10455 - histidine--tRNA ligase, at 2,156,891 to 2,158,168 _10455 OLJFJH_10460: OLJFJH_10460 - Ancillary SecYEG translocon subunit, at 2,158,206 to 2,158,826 _10460 OLJFJH_10465: OLJFJH_10465 - outer membrane protein assembly factor BamB, at 2,158,955 to 2,160,136 _10465 OLJFJH_10470: OLJFJH_10470 - ribosome biogenesis GTPase Der, at 2,160,349 to 2,161,848 _10470 Position (kb) 2158 2159 2160 2161Strain fitness (log2 ratio) -2 -1 0 1 2at 2158.099 kb on + strandat 2158.158 kb on + strandat 2158.190 kb on - strandat 2158.200 kb on + strandat 2158.200 kb on + strandat 2158.201 kb on - strandat 2158.215 kb on + strandat 2158.216 kb on - strandat 2158.312 kb on + strand, within OLJFJH_10460at 2158.457 kb on + strand, within OLJFJH_10460at 2158.497 kb on + strand, within OLJFJH_10460at 2158.497 kb on + strand, within OLJFJH_10460at 2158.500 kb on - strand, within OLJFJH_10460at 2158.537 kb on + strand, within OLJFJH_10460at 2158.827 kb on + strandat 2158.827 kb on + strandat 2158.828 kb on - strandat 2158.828 kb on - strandat 2158.834 kb on - strandat 2158.878 kb on - strandat 2158.878 kb on - strandat 2158.878 kb on - strandat 2158.878 kb on - strandat 2158.913 kb on + strandat 2159.523 kb on + strand, within OLJFJH_10465at 2159.523 kb on + strand, within OLJFJH_10465at 2159.523 kb on + strand, within OLJFJH_10465at 2159.524 kb on - strand, within OLJFJH_10465at 2159.635 kb on + strand, within OLJFJH_10465at 2159.651 kb on - strand, within OLJFJH_10465at 2159.744 kb on + strand, within OLJFJH_10465at 2159.954 kb on + strand, within OLJFJH_10465at 2159.954 kb on + strand, within OLJFJH_10465at 2159.954 kb on + strand, within OLJFJH_10465at 2159.954 kb on + strand, within OLJFJH_10465at 2159.955 kb on - strand, within OLJFJH_10465at 2160.127 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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2,158,099 + -0.1
2,158,158 + -0.3
2,158,190 - -0.1
2,158,200 + +0.2
2,158,200 + +0.4
2,158,201 - -0.4
2,158,215 + +0.9
2,158,216 - -0.8
2,158,312 + OLJFJH_10460 0.17 -0.8
2,158,457 + OLJFJH_10460 0.40 +0.5
2,158,497 + OLJFJH_10460 0.47 -0.4
2,158,497 + OLJFJH_10460 0.47 +0.3
2,158,500 - OLJFJH_10460 0.47 +0.2
2,158,537 + OLJFJH_10460 0.53 +0.1
2,158,827 + +0.5
2,158,827 + -0.3
2,158,828 - +0.2
2,158,828 - -0.4
2,158,834 - -0.8
2,158,878 - -0.6
2,158,878 - -0.1
2,158,878 - +0.2
2,158,878 - -0.1
2,158,913 + +0.0
2,159,523 + OLJFJH_10465 0.48 -2.4
2,159,523 + OLJFJH_10465 0.48 +1.4
2,159,523 + OLJFJH_10465 0.48 -0.1
2,159,524 - OLJFJH_10465 0.48 +0.2
2,159,635 + OLJFJH_10465 0.58 -0.4
2,159,651 - OLJFJH_10465 0.59 -1.0
2,159,744 + OLJFJH_10465 0.67 -0.4
2,159,954 + OLJFJH_10465 0.85 -0.8
2,159,954 + OLJFJH_10465 0.85 -0.4
2,159,954 + OLJFJH_10465 0.85 +0.2
2,159,954 + OLJFJH_10465 0.85 +0.2
2,159,955 - OLJFJH_10465 0.85 -0.1
2,160,127 + +2.5

Or see this region's nucleotide sequence