Strain Fitness in Erwinia amylovora T8 around OLJFJH_08305

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_08295 and OLJFJH_08300 are separated by 50 nucleotidesOLJFJH_08300 and OLJFJH_08305 overlap by 58 nucleotidesOLJFJH_08305 and OLJFJH_08310 are separated by 1 nucleotides OLJFJH_08295: OLJFJH_08295 - hypothetical protein, at 1,713,097 to 1,713,867 _08295 OLJFJH_08300: OLJFJH_08300 - hypothetical protein, at 1,713,918 to 1,714,688 _08300 OLJFJH_08305: OLJFJH_08305 - hypothetical protein, at 1,714,631 to 1,714,933 _08305 OLJFJH_08310: OLJFJH_08310 - hypothetical protein, at 1,714,935 to 1,715,876 _08310 Position (kb) 1714 1715Strain fitness (log2 ratio) -2 -1 0 1 2at 1713.660 kb on + strand, within OLJFJH_08295at 1713.933 kb on - strandat 1714.244 kb on - strand, within OLJFJH_08300at 1714.244 kb on - strand, within OLJFJH_08300at 1714.264 kb on + strand, within OLJFJH_08300at 1714.434 kb on + strand, within OLJFJH_08300at 1714.448 kb on + strand, within OLJFJH_08300at 1714.534 kb on - strand, within OLJFJH_08300at 1714.728 kb on - strand, within OLJFJH_08305at 1714.970 kb on + strandat 1715.230 kb on - strand, within OLJFJH_08310at 1715.354 kb on - strand, within OLJFJH_08310at 1715.449 kb on + strand, within OLJFJH_08310at 1715.550 kb on - strand, within OLJFJH_08310

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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1,713,660 + OLJFJH_08295 0.73 -2.5
1,713,933 - -0.2
1,714,244 - OLJFJH_08300 0.42 -0.8
1,714,244 - OLJFJH_08300 0.42 -0.0
1,714,264 + OLJFJH_08300 0.45 -0.4
1,714,434 + OLJFJH_08300 0.67 -0.4
1,714,448 + OLJFJH_08300 0.69 +0.2
1,714,534 - OLJFJH_08300 0.80 +0.6
1,714,728 - OLJFJH_08305 0.32 -1.8
1,714,970 + -2.5
1,715,230 - OLJFJH_08310 0.31 +0.6
1,715,354 - OLJFJH_08310 0.44 +2.2
1,715,449 + OLJFJH_08310 0.55 +0.9
1,715,550 - OLJFJH_08310 0.65 -0.6

Or see this region's nucleotide sequence