Strain Fitness in Erwinia amylovora T8 around OLJFJH_06535

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06525 and OLJFJH_06530 are separated by 75 nucleotidesOLJFJH_06530 and OLJFJH_06535 are separated by 28 nucleotidesOLJFJH_06535 and OLJFJH_06540 are separated by 249 nucleotides OLJFJH_06525: OLJFJH_06525 - Sec-independent protein translocase subunit TatC, at 1,321,420 to 1,322,181 _06525 OLJFJH_06530: OLJFJH_06530 - 3'-5' ssDNA/RNA exonuclease TatD, at 1,322,257 to 1,323,036 _06530 OLJFJH_06535: OLJFJH_06535 - transcription/translation regulatory transformer protein RfaH, at 1,323,065 to 1,323,565 _06535 OLJFJH_06540: OLJFJH_06540 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 1,323,815 to 1,325,299 _06540 Position (kb) 1323 1324Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5 6 7at 1322.126 kb on - strandat 1322.126 kb on - strandat 1322.215 kb on + strandat 1322.216 kb on - strandat 1322.257 kb on - strandat 1322.257 kb on - strandat 1322.257 kb on - strandat 1322.274 kb on - strandat 1322.310 kb on + strandat 1322.319 kb on - strandat 1322.349 kb on + strand, within OLJFJH_06530at 1322.419 kb on + strand, within OLJFJH_06530at 1322.513 kb on + strand, within OLJFJH_06530at 1322.513 kb on + strand, within OLJFJH_06530at 1322.513 kb on + strand, within OLJFJH_06530at 1322.514 kb on - strand, within OLJFJH_06530at 1322.514 kb on - strand, within OLJFJH_06530at 1322.668 kb on - strand, within OLJFJH_06530at 1322.697 kb on + strand, within OLJFJH_06530at 1322.765 kb on + strand, within OLJFJH_06530at 1322.765 kb on + strand, within OLJFJH_06530at 1322.766 kb on - strand, within OLJFJH_06530at 1322.769 kb on + strand, within OLJFJH_06530at 1322.775 kb on + strand, within OLJFJH_06530at 1322.919 kb on + strand, within OLJFJH_06530at 1322.919 kb on + strand, within OLJFJH_06530at 1322.919 kb on + strand, within OLJFJH_06530at 1322.944 kb on - strand, within OLJFJH_06530at 1322.944 kb on - strand, within OLJFJH_06530at 1322.963 kb on + strandat 1322.963 kb on + strandat 1322.966 kb on + strandat 1322.966 kb on + strandat 1322.966 kb on + strandat 1322.967 kb on - strandat 1322.967 kb on - strandat 1322.967 kb on - strandat 1322.967 kb on - strandat 1322.967 kb on - strandat 1323.053 kb on + strandat 1323.053 kb on + strandat 1323.053 kb on + strandat 1323.053 kb on + strandat 1323.053 kb on + strandat 1323.053 kb on + strandat 1323.053 kb on + strandat 1323.053 kb on + strandat 1323.053 kb on + strandat 1323.053 kb on + strandat 1323.054 kb on - strandat 1323.054 kb on - strandat 1323.054 kb on - strandat 1323.054 kb on - strandat 1323.054 kb on - strandat 1323.054 kb on - strandat 1323.054 kb on - strandat 1323.054 kb on - strandat 1323.054 kb on - strandat 1323.066 kb on + strandat 1323.128 kb on + strand, within OLJFJH_06535at 1323.137 kb on + strand, within OLJFJH_06535at 1323.175 kb on + strand, within OLJFJH_06535at 1323.176 kb on - strand, within OLJFJH_06535at 1323.288 kb on - strand, within OLJFJH_06535at 1323.290 kb on + strand, within OLJFJH_06535at 1323.290 kb on + strand, within OLJFJH_06535at 1323.290 kb on + strand, within OLJFJH_06535at 1323.291 kb on - strand, within OLJFJH_06535at 1323.406 kb on - strand, within OLJFJH_06535at 1323.409 kb on + strand, within OLJFJH_06535at 1323.436 kb on + strand, within OLJFJH_06535at 1323.521 kb on + strandat 1323.522 kb on - strandat 1323.524 kb on + strandat 1323.524 kb on + strandat 1323.524 kb on + strandat 1323.524 kb on + strandat 1323.525 kb on - strandat 1323.525 kb on - strandat 1323.525 kb on - strandat 1323.525 kb on - strandat 1323.548 kb on + strandat 1323.548 kb on + strandat 1323.549 kb on - strandat 1323.549 kb on - strandat 1323.552 kb on + strandat 1323.552 kb on + strandat 1323.553 kb on - strandat 1323.616 kb on + strandat 1323.616 kb on + strandat 1323.616 kb on + strandat 1323.616 kb on + strandat 1323.616 kb on + strandat 1323.617 kb on - strandat 1323.617 kb on - strandat 1323.617 kb on - strandat 1323.617 kb on - strandat 1323.617 kb on - strandat 1323.617 kb on - strandat 1323.617 kb on - strandat 1323.620 kb on + strandat 1323.620 kb on + strandat 1323.620 kb on + strandat 1323.620 kb on + strandat 1323.620 kb on + strandat 1323.621 kb on - strandat 1323.621 kb on - strandat 1323.692 kb on + strandat 1323.693 kb on - strandat 1323.712 kb on + strandat 1323.742 kb on - strandat 1323.777 kb on + strandat 1323.777 kb on + strandat 1323.777 kb on + strandat 1323.778 kb on - strandat 1323.779 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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1,322,126 - +0.9
1,322,126 - -0.0
1,322,215 + +1.2
1,322,216 - +0.3
1,322,257 - -0.3
1,322,257 - -0.2
1,322,257 - +0.3
1,322,274 - -0.2
1,322,310 + -2.9
1,322,319 - +0.7
1,322,349 + OLJFJH_06530 0.12 +0.2
1,322,419 + OLJFJH_06530 0.21 -0.7
1,322,513 + OLJFJH_06530 0.33 -0.2
1,322,513 + OLJFJH_06530 0.33 +0.8
1,322,513 + OLJFJH_06530 0.33 +1.5
1,322,514 - OLJFJH_06530 0.33 +1.3
1,322,514 - OLJFJH_06530 0.33 +1.1
1,322,668 - OLJFJH_06530 0.53 +0.3
1,322,697 + OLJFJH_06530 0.56 +0.1
1,322,765 + OLJFJH_06530 0.65 +1.3
1,322,765 + OLJFJH_06530 0.65 -0.2
1,322,766 - OLJFJH_06530 0.65 -0.8
1,322,769 + OLJFJH_06530 0.66 +0.1
1,322,775 + OLJFJH_06530 0.66 +0.3
1,322,919 + OLJFJH_06530 0.85 -0.5
1,322,919 + OLJFJH_06530 0.85 -0.7
1,322,919 + OLJFJH_06530 0.85 -1.0
1,322,944 - OLJFJH_06530 0.88 -0.4
1,322,944 - OLJFJH_06530 0.88 -0.5
1,322,963 + +0.3
1,322,963 + +2.6
1,322,966 + +0.4
1,322,966 + +7.2
1,322,966 + +1.7
1,322,967 - +1.4
1,322,967 - +1.7
1,322,967 - -0.4
1,322,967 - +0.0
1,322,967 - -0.1
1,323,053 + +0.1
1,323,053 + -0.1
1,323,053 + +4.7
1,323,053 + -0.7
1,323,053 + +0.1
1,323,053 + -0.9
1,323,053 + +0.2
1,323,053 + -2.2
1,323,053 + +2.3
1,323,053 + +0.1
1,323,054 - +3.0
1,323,054 - -1.7
1,323,054 - +2.1
1,323,054 - +1.1
1,323,054 - +0.0
1,323,054 - +0.4
1,323,054 - +0.4
1,323,054 - -0.7
1,323,054 - -0.3
1,323,066 + +1.2
1,323,128 + OLJFJH_06535 0.13 -2.7
1,323,137 + OLJFJH_06535 0.14 -1.4
1,323,175 + OLJFJH_06535 0.22 -1.2
1,323,176 - OLJFJH_06535 0.22 +1.3
1,323,288 - OLJFJH_06535 0.45 +2.3
1,323,290 + OLJFJH_06535 0.45 -2.4
1,323,290 + OLJFJH_06535 0.45 -0.5
1,323,290 + OLJFJH_06535 0.45 -2.1
1,323,291 - OLJFJH_06535 0.45 -3.6
1,323,406 - OLJFJH_06535 0.68 -1.2
1,323,409 + OLJFJH_06535 0.69 -1.4
1,323,436 + OLJFJH_06535 0.74 -2.2
1,323,521 + -2.3
1,323,522 - +0.3
1,323,524 + -0.7
1,323,524 + -1.5
1,323,524 + -2.9
1,323,524 + -2.8
1,323,525 - -2.6
1,323,525 - -2.4
1,323,525 - -2.0
1,323,525 - -3.4
1,323,548 + -3.1
1,323,548 + -2.1
1,323,549 - -4.9
1,323,549 - -4.1
1,323,552 + -2.8
1,323,552 + -4.1
1,323,553 - -1.4
1,323,616 + +0.3
1,323,616 + +0.2
1,323,616 + -0.9
1,323,616 + -0.4
1,323,616 + +0.7
1,323,617 - +1.2
1,323,617 - -1.4
1,323,617 - -0.5
1,323,617 - -0.0
1,323,617 - +1.7
1,323,617 - +0.5
1,323,617 - +1.4
1,323,620 + -1.6
1,323,620 + -1.1
1,323,620 + +0.6
1,323,620 + -1.6
1,323,620 + -2.0
1,323,621 - -0.4
1,323,621 - -0.7
1,323,692 + -0.5
1,323,693 - +2.5
1,323,712 + -0.5
1,323,742 - -2.6
1,323,777 + +1.6
1,323,777 + -0.6
1,323,777 + +0.6
1,323,778 - +1.8
1,323,779 + -0.3

Or see this region's nucleotide sequence