Strain Fitness in Erwinia amylovora T8 around OLJFJH_06500

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06495 and OLJFJH_06500 are separated by 134 nucleotidesOLJFJH_06500 and OLJFJH_06505 are separated by 12 nucleotidesOLJFJH_06505 and OLJFJH_06510 overlap by 4 nucleotides OLJFJH_06495: OLJFJH_06495 - DNA recombination protein RmuC, at 1,315,880 to 1,317,355 _06495 OLJFJH_06500: OLJFJH_06500 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1 4-benzoquinol methylase UbiE, at 1,317,490 to 1,318,245 _06500 OLJFJH_06505: OLJFJH_06505 - Ubiquinone biosynthesis accessory factor UbiJ, at 1,318,258 to 1,318,863 _06505 OLJFJH_06510: OLJFJH_06510 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 1,318,860 to 1,320,497 _06510 Position (kb) 1317 1318 1319Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1316.593 kb on + strand, within OLJFJH_06495at 1316.725 kb on - strand, within OLJFJH_06495at 1316.746 kb on + strand, within OLJFJH_06495at 1316.834 kb on - strand, within OLJFJH_06495at 1316.856 kb on + strand, within OLJFJH_06495at 1316.898 kb on + strand, within OLJFJH_06495at 1316.912 kb on + strand, within OLJFJH_06495at 1316.913 kb on - strand, within OLJFJH_06495at 1317.001 kb on + strand, within OLJFJH_06495at 1317.001 kb on + strand, within OLJFJH_06495at 1317.022 kb on + strand, within OLJFJH_06495at 1317.023 kb on - strand, within OLJFJH_06495at 1317.043 kb on + strand, within OLJFJH_06495at 1317.044 kb on - strand, within OLJFJH_06495at 1317.094 kb on + strand, within OLJFJH_06495at 1317.094 kb on + strand, within OLJFJH_06495at 1317.095 kb on - strand, within OLJFJH_06495at 1317.149 kb on - strand, within OLJFJH_06495at 1317.149 kb on - strand, within OLJFJH_06495at 1317.354 kb on - strandat 1317.370 kb on + strandat 1317.370 kb on + strandat 1317.371 kb on - strandat 1317.378 kb on - strandat 1317.450 kb on + strandat 1318.265 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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1,316,593 + OLJFJH_06495 0.48 +0.1
1,316,725 - OLJFJH_06495 0.57 +1.0
1,316,746 + OLJFJH_06495 0.59 +0.6
1,316,834 - OLJFJH_06495 0.65 -1.0
1,316,856 + OLJFJH_06495 0.66 +0.2
1,316,898 + OLJFJH_06495 0.69 -0.2
1,316,912 + OLJFJH_06495 0.70 -1.2
1,316,913 - OLJFJH_06495 0.70 +0.9
1,317,001 + OLJFJH_06495 0.76 +3.0
1,317,001 + OLJFJH_06495 0.76 -0.3
1,317,022 + OLJFJH_06495 0.77 -0.7
1,317,023 - OLJFJH_06495 0.77 +1.0
1,317,043 + OLJFJH_06495 0.79 +2.3
1,317,044 - OLJFJH_06495 0.79 -1.3
1,317,094 + OLJFJH_06495 0.82 +0.5
1,317,094 + OLJFJH_06495 0.82 -0.3
1,317,095 - OLJFJH_06495 0.82 +0.4
1,317,149 - OLJFJH_06495 0.86 -0.9
1,317,149 - OLJFJH_06495 0.86 -1.6
1,317,354 - +0.2
1,317,370 + -1.0
1,317,370 + +0.8
1,317,371 - +1.0
1,317,378 - -2.0
1,317,450 + -1.1
1,318,265 + +0.1

Or see this region's nucleotide sequence