Strain Fitness in Erwinia amylovora T8 around OLJFJH_06105

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06100 and OLJFJH_06105 are separated by 253 nucleotidesOLJFJH_06105 and OLJFJH_06110 are separated by 290 nucleotides OLJFJH_06100: OLJFJH_06100 - bifunctional aspartate kinase/homoserine dehydrogenase II, at 1,228,364 to 1,230,799 _06100 OLJFJH_06105: OLJFJH_06105 - methylenetetrahydrofolate reductase, at 1,231,053 to 1,231,958 _06105 OLJFJH_06110: OLJFJH_06110 - Phosphoenolpyruvate carboxylase, at 1,232,249 to 1,234,900 _06110 Position (kb) 1231 1232Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1230.083 kb on - strand, within OLJFJH_06100at 1230.114 kb on - strand, within OLJFJH_06100at 1230.161 kb on + strand, within OLJFJH_06100at 1230.161 kb on + strand, within OLJFJH_06100at 1230.161 kb on + strand, within OLJFJH_06100at 1230.162 kb on - strand, within OLJFJH_06100at 1230.199 kb on + strand, within OLJFJH_06100at 1230.245 kb on - strand, within OLJFJH_06100at 1230.245 kb on - strand, within OLJFJH_06100at 1230.282 kb on + strand, within OLJFJH_06100at 1230.706 kb on + strandat 1230.797 kb on + strandat 1230.797 kb on + strandat 1230.798 kb on - strandat 1230.798 kb on - strandat 1230.801 kb on - strandat 1230.801 kb on - strandat 1230.809 kb on - strandat 1230.827 kb on - strandat 1230.836 kb on + strandat 1230.837 kb on - strandat 1230.900 kb on - strandat 1230.957 kb on + strandat 1230.957 kb on + strandat 1230.958 kb on - strandat 1230.958 kb on - strandat 1230.958 kb on - strandat 1230.972 kb on + strandat 1231.268 kb on + strand, within OLJFJH_06105at 1231.268 kb on + strand, within OLJFJH_06105at 1231.269 kb on - strand, within OLJFJH_06105at 1231.272 kb on - strand, within OLJFJH_06105at 1231.281 kb on - strand, within OLJFJH_06105at 1231.281 kb on - strand, within OLJFJH_06105at 1231.281 kb on - strand, within OLJFJH_06105at 1231.348 kb on + strand, within OLJFJH_06105at 1231.348 kb on + strand, within OLJFJH_06105at 1231.349 kb on - strand, within OLJFJH_06105at 1231.352 kb on + strand, within OLJFJH_06105at 1231.353 kb on - strand, within OLJFJH_06105at 1231.353 kb on - strand, within OLJFJH_06105at 1231.382 kb on + strand, within OLJFJH_06105at 1231.382 kb on + strand, within OLJFJH_06105at 1231.491 kb on - strand, within OLJFJH_06105at 1231.559 kb on + strand, within OLJFJH_06105at 1231.559 kb on + strand, within OLJFJH_06105at 1231.560 kb on - strand, within OLJFJH_06105at 1231.565 kb on + strand, within OLJFJH_06105at 1231.566 kb on - strand, within OLJFJH_06105at 1231.566 kb on - strand, within OLJFJH_06105at 1231.566 kb on - strand, within OLJFJH_06105at 1231.566 kb on - strand, within OLJFJH_06105at 1231.593 kb on - strand, within OLJFJH_06105at 1231.624 kb on - strand, within OLJFJH_06105at 1231.728 kb on - strand, within OLJFJH_06105at 1231.878 kb on - strandat 1231.897 kb on + strandat 1231.897 kb on + strandat 1231.898 kb on - strandat 1231.898 kb on - strandat 1231.898 kb on - strandat 1231.902 kb on + strandat 1231.902 kb on + strandat 1231.902 kb on + strandat 1231.902 kb on + strandat 1231.903 kb on - strandat 1231.916 kb on + strandat 1231.916 kb on + strandat 1231.917 kb on - strandat 1231.917 kb on - strandat 1232.011 kb on - strandat 1232.022 kb on + strandat 1232.022 kb on + strandat 1232.022 kb on + strandat 1232.022 kb on + strandat 1232.022 kb on + strandat 1232.023 kb on - strandat 1232.023 kb on - strandat 1232.026 kb on - strandat 1232.080 kb on + strandat 1232.082 kb on + strandat 1232.083 kb on - strandat 1232.083 kb on - strandat 1232.125 kb on - strandat 1232.125 kb on - strandat 1232.125 kb on - strandat 1232.133 kb on + strandat 1232.133 kb on + strandat 1232.133 kb on + strandat 1232.287 kb on + strandat 1232.287 kb on + strandat 1232.287 kb on + strandat 1232.378 kb on + strandat 1232.404 kb on + strandat 1232.405 kb on - strandat 1232.508 kb on - strandat 1232.508 kb on - strandat 1232.556 kb on + strand, within OLJFJH_06110at 1232.559 kb on + strand, within OLJFJH_06110at 1232.559 kb on + strand, within OLJFJH_06110at 1232.765 kb on + strand, within OLJFJH_06110at 1232.859 kb on + strand, within OLJFJH_06110at 1232.860 kb on - strand, within OLJFJH_06110at 1232.889 kb on + strand, within OLJFJH_06110at 1232.898 kb on + strand, within OLJFJH_06110at 1232.898 kb on + strand, within OLJFJH_06110at 1232.899 kb on - strand, within OLJFJH_06110at 1232.933 kb on - strand, within OLJFJH_06110

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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1,230,083 - OLJFJH_06100 0.71 -0.2
1,230,114 - OLJFJH_06100 0.72 -0.3
1,230,161 + OLJFJH_06100 0.74 -1.5
1,230,161 + OLJFJH_06100 0.74 -1.1
1,230,161 + OLJFJH_06100 0.74 +1.4
1,230,162 - OLJFJH_06100 0.74 +0.7
1,230,199 + OLJFJH_06100 0.75 +0.5
1,230,245 - OLJFJH_06100 0.77 +2.1
1,230,245 - OLJFJH_06100 0.77 +0.8
1,230,282 + OLJFJH_06100 0.79 -0.2
1,230,706 + +1.5
1,230,797 + +1.3
1,230,797 + -0.3
1,230,798 - +1.0
1,230,798 - +0.2
1,230,801 - -0.2
1,230,801 - -0.7
1,230,809 - -1.7
1,230,827 - +0.3
1,230,836 + -1.1
1,230,837 - +0.2
1,230,900 - -0.7
1,230,957 + -2.5
1,230,957 + -0.1
1,230,958 - -1.2
1,230,958 - -2.6
1,230,958 - -2.8
1,230,972 + -1.1
1,231,268 + OLJFJH_06105 0.24 -2.6
1,231,268 + OLJFJH_06105 0.24 -4.7
1,231,269 - OLJFJH_06105 0.24 -2.6
1,231,272 - OLJFJH_06105 0.24 -4.1
1,231,281 - OLJFJH_06105 0.25 -0.2
1,231,281 - OLJFJH_06105 0.25 -5.7
1,231,281 - OLJFJH_06105 0.25 -0.3
1,231,348 + OLJFJH_06105 0.33 -5.5
1,231,348 + OLJFJH_06105 0.33 -3.7
1,231,349 - OLJFJH_06105 0.33 -1.1
1,231,352 + OLJFJH_06105 0.33 -4.6
1,231,353 - OLJFJH_06105 0.33 -1.7
1,231,353 - OLJFJH_06105 0.33 -4.4
1,231,382 + OLJFJH_06105 0.36 -0.7
1,231,382 + OLJFJH_06105 0.36 -3.3
1,231,491 - OLJFJH_06105 0.48 -4.1
1,231,559 + OLJFJH_06105 0.56 -4.4
1,231,559 + OLJFJH_06105 0.56 +1.7
1,231,560 - OLJFJH_06105 0.56 -5.0
1,231,565 + OLJFJH_06105 0.57 -2.3
1,231,566 - OLJFJH_06105 0.57 -2.9
1,231,566 - OLJFJH_06105 0.57 -3.6
1,231,566 - OLJFJH_06105 0.57 -3.2
1,231,566 - OLJFJH_06105 0.57 -2.6
1,231,593 - OLJFJH_06105 0.60 -3.5
1,231,624 - OLJFJH_06105 0.63 -1.8
1,231,728 - OLJFJH_06105 0.75 -2.1
1,231,878 - -3.0
1,231,897 + -3.6
1,231,897 + -4.8
1,231,898 - -2.1
1,231,898 - -2.0
1,231,898 - -2.5
1,231,902 + -4.4
1,231,902 + -4.1
1,231,902 + -3.0
1,231,902 + -1.3
1,231,903 - -3.2
1,231,916 + -2.8
1,231,916 + -2.1
1,231,917 - -2.9
1,231,917 - -2.2
1,232,011 - -0.1
1,232,022 + -0.2
1,232,022 + +0.0
1,232,022 + +0.6
1,232,022 + +0.2
1,232,022 + -0.8
1,232,023 - -0.5
1,232,023 - -1.1
1,232,026 - -1.6
1,232,080 + +1.3
1,232,082 + -0.4
1,232,083 - +1.1
1,232,083 - +0.9
1,232,125 - -0.7
1,232,125 - +0.2
1,232,125 - +0.5
1,232,133 + +2.2
1,232,133 + -0.3
1,232,133 + -0.9
1,232,287 + +0.0
1,232,287 + -0.7
1,232,287 + -0.5
1,232,378 + -1.7
1,232,404 + -0.1
1,232,405 - -0.4
1,232,508 - +0.0
1,232,508 - -1.0
1,232,556 + OLJFJH_06110 0.12 -1.9
1,232,559 + OLJFJH_06110 0.12 -0.0
1,232,559 + OLJFJH_06110 0.12 +0.5
1,232,765 + OLJFJH_06110 0.19 +0.0
1,232,859 + OLJFJH_06110 0.23 -1.4
1,232,860 - OLJFJH_06110 0.23 -0.2
1,232,889 + OLJFJH_06110 0.24 -0.2
1,232,898 + OLJFJH_06110 0.24 -3.2
1,232,898 + OLJFJH_06110 0.24 +1.9
1,232,899 - OLJFJH_06110 0.25 -0.9
1,232,933 - OLJFJH_06110 0.26 +0.4

Or see this region's nucleotide sequence