Strain Fitness in Erwinia amylovora T8 around OLJFJH_05695

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_05685 and OLJFJH_05690 are separated by 89 nucleotidesOLJFJH_05690 and OLJFJH_05695 overlap by 4 nucleotidesOLJFJH_05695 and OLJFJH_05700 overlap by 32 nucleotides OLJFJH_05685: OLJFJH_05685 - hypothetical protein, at 1,154,794 to 1,155,699 _05685 OLJFJH_05690: OLJFJH_05690 - hypothetical protein, at 1,155,789 to 1,156,448 _05690 OLJFJH_05695: OLJFJH_05695 - tyrosine-type recombinase/integrase, at 1,156,445 to 1,157,737 _05695 OLJFJH_05700: OLJFJH_05700 - site-specific integrase, at 1,157,706 to 1,158,992 _05700 Position (kb) 1156 1157 1158Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1156.069 kb on + strand, within OLJFJH_05690at 1156.159 kb on + strand, within OLJFJH_05690at 1156.160 kb on - strand, within OLJFJH_05690at 1156.307 kb on + strand, within OLJFJH_05690at 1156.475 kb on - strandat 1156.524 kb on - strandat 1156.672 kb on + strand, within OLJFJH_05695at 1156.693 kb on - strand, within OLJFJH_05695at 1156.831 kb on + strand, within OLJFJH_05695at 1157.844 kb on - strand, within OLJFJH_05700at 1158.521 kb on + strand, within OLJFJH_05700at 1158.609 kb on + strand, within OLJFJH_05700

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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1,156,069 + OLJFJH_05690 0.42 +3.1
1,156,159 + OLJFJH_05690 0.56 +1.7
1,156,160 - OLJFJH_05690 0.56 +0.7
1,156,307 + OLJFJH_05690 0.78 +1.6
1,156,475 - -0.2
1,156,524 - -0.1
1,156,672 + OLJFJH_05695 0.18 -0.3
1,156,693 - OLJFJH_05695 0.19 -2.2
1,156,831 + OLJFJH_05695 0.30 -0.8
1,157,844 - OLJFJH_05700 0.11 +0.1
1,158,521 + OLJFJH_05700 0.63 -0.1
1,158,609 + OLJFJH_05700 0.70 +0.4

Or see this region's nucleotide sequence