Strain Fitness in Erwinia amylovora T8 around OLJFJH_05565

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_05560 and OLJFJH_05565 are separated by 19 nucleotidesOLJFJH_05565 and OLJFJH_05570 are separated by 56 nucleotidesOLJFJH_05570 and OLJFJH_05575 are separated by 259 nucleotides OLJFJH_05560: OLJFJH_05560 - bifunctional GTP diphosphokinase/guanosine-3' 5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 1,133,229 to 1,135,352 _05560 OLJFJH_05565: OLJFJH_05565 - DNA-directed RNA polymerase subunit omega, at 1,135,372 to 1,135,647 _05565 OLJFJH_05570: OLJFJH_05570 - guanylate kinase, at 1,135,704 to 1,136,327 _05570 OLJFJH_05575: OLJFJH_05575 - NAD-dependent DNA ligase LigB, at 1,136,587 to 1,138,251 _05575 Position (kb) 1135 1136Strain fitness (log2 ratio) -2 -1 0 1 2at 1135.349 kb on - strandat 1135.619 kb on - strand, within OLJFJH_05565at 1135.648 kb on - strandat 1135.648 kb on - strandat 1135.657 kb on - strandat 1136.375 kb on - strandat 1136.375 kb on - strandat 1136.377 kb on - strandat 1136.377 kb on - strandat 1136.423 kb on + strandat 1136.449 kb on + strandat 1136.536 kb on + strandat 1136.537 kb on - strandat 1136.537 kb on - strandat 1136.537 kb on - strandat 1136.567 kb on + strandat 1136.568 kb on - strandat 1136.568 kb on - strandat 1136.594 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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1,135,349 - +2.1
1,135,619 - OLJFJH_05565 0.89 -1.5
1,135,648 - -0.5
1,135,648 - -2.3
1,135,657 - -0.0
1,136,375 - +0.7
1,136,375 - +0.1
1,136,377 - -1.0
1,136,377 - -1.3
1,136,423 + -0.5
1,136,449 + -0.2
1,136,536 + +2.4
1,136,537 - -0.8
1,136,537 - +1.0
1,136,537 - +0.3
1,136,567 + +0.3
1,136,568 - +0.4
1,136,568 - +0.8
1,136,594 - +0.2

Or see this region's nucleotide sequence