Strain Fitness in Erwinia amylovora T8 around OLJFJH_04805

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04800 and OLJFJH_04805 are separated by 298 nucleotidesOLJFJH_04805 and OLJFJH_04810 are separated by 192 nucleotides OLJFJH_04800: OLJFJH_04800 - peptidase M16, at 942,233 to 943,705 _04800 OLJFJH_04805: OLJFJH_04805 - C4-dicarboxylate transport protein, at 944,004 to 945,278 _04805 OLJFJH_04810: OLJFJH_04810 - biofilm formation regulator HmsP, at 945,471 to 947,465 _04810 Position (kb) 944 945 946Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 943.072 kb on - strand, within OLJFJH_04800at 943.083 kb on + strand, within OLJFJH_04800at 943.159 kb on + strand, within OLJFJH_04800at 943.160 kb on - strand, within OLJFJH_04800at 943.255 kb on + strand, within OLJFJH_04800at 943.255 kb on + strand, within OLJFJH_04800at 943.305 kb on - strand, within OLJFJH_04800at 943.341 kb on + strand, within OLJFJH_04800at 943.341 kb on + strand, within OLJFJH_04800at 943.341 kb on + strand, within OLJFJH_04800at 943.342 kb on - strand, within OLJFJH_04800at 943.342 kb on - strand, within OLJFJH_04800at 943.356 kb on + strand, within OLJFJH_04800at 943.479 kb on + strand, within OLJFJH_04800at 943.507 kb on + strand, within OLJFJH_04800at 943.507 kb on + strand, within OLJFJH_04800at 943.507 kb on + strand, within OLJFJH_04800at 943.508 kb on - strand, within OLJFJH_04800at 943.508 kb on - strand, within OLJFJH_04800at 943.508 kb on - strand, within OLJFJH_04800at 943.668 kb on - strandat 943.737 kb on - strandat 943.737 kb on - strandat 943.809 kb on + strandat 943.809 kb on + strandat 943.904 kb on + strandat 943.923 kb on + strandat 944.033 kb on + strandat 944.082 kb on - strandat 944.144 kb on + strand, within OLJFJH_04805at 944.145 kb on - strand, within OLJFJH_04805at 944.145 kb on - strand, within OLJFJH_04805at 944.145 kb on - strand, within OLJFJH_04805at 944.275 kb on - strand, within OLJFJH_04805at 944.334 kb on - strand, within OLJFJH_04805at 944.334 kb on - strand, within OLJFJH_04805at 944.356 kb on + strand, within OLJFJH_04805at 944.357 kb on - strand, within OLJFJH_04805at 944.424 kb on - strand, within OLJFJH_04805at 944.424 kb on - strand, within OLJFJH_04805at 944.424 kb on - strand, within OLJFJH_04805at 944.454 kb on - strand, within OLJFJH_04805at 944.513 kb on + strand, within OLJFJH_04805at 944.513 kb on + strand, within OLJFJH_04805at 944.516 kb on - strand, within OLJFJH_04805at 944.598 kb on - strand, within OLJFJH_04805at 944.599 kb on + strand, within OLJFJH_04805at 944.600 kb on - strand, within OLJFJH_04805at 944.600 kb on - strand, within OLJFJH_04805at 944.600 kb on - strand, within OLJFJH_04805at 944.600 kb on - strand, within OLJFJH_04805at 944.600 kb on - strand, within OLJFJH_04805at 944.609 kb on + strand, within OLJFJH_04805at 944.647 kb on + strand, within OLJFJH_04805at 944.647 kb on + strand, within OLJFJH_04805at 944.647 kb on + strand, within OLJFJH_04805at 944.648 kb on - strand, within OLJFJH_04805at 944.648 kb on - strand, within OLJFJH_04805at 944.651 kb on + strand, within OLJFJH_04805at 944.708 kb on + strand, within OLJFJH_04805at 944.708 kb on + strand, within OLJFJH_04805at 944.709 kb on - strand, within OLJFJH_04805at 944.709 kb on - strand, within OLJFJH_04805at 944.753 kb on + strand, within OLJFJH_04805at 944.754 kb on - strand, within OLJFJH_04805at 944.757 kb on + strand, within OLJFJH_04805at 945.080 kb on + strand, within OLJFJH_04805at 945.080 kb on + strand, within OLJFJH_04805at 945.134 kb on + strand, within OLJFJH_04805at 945.251 kb on - strandat 945.279 kb on - strandat 945.299 kb on + strandat 945.303 kb on + strandat 945.304 kb on - strandat 945.304 kb on - strandat 945.305 kb on + strandat 945.350 kb on + strandat 945.351 kb on - strandat 945.351 kb on - strandat 945.354 kb on + strandat 945.354 kb on + strandat 945.354 kb on + strandat 945.355 kb on - strandat 945.356 kb on + strandat 945.356 kb on + strandat 945.356 kb on + strandat 945.356 kb on + strandat 945.357 kb on - strandat 945.383 kb on + strandat 945.384 kb on - strandat 945.497 kb on + strandat 945.644 kb on + strandat 945.665 kb on - strandat 945.686 kb on + strand, within OLJFJH_04810at 945.686 kb on + strand, within OLJFJH_04810at 945.686 kb on + strand, within OLJFJH_04810at 945.709 kb on - strand, within OLJFJH_04810at 945.722 kb on + strand, within OLJFJH_04810at 945.723 kb on - strand, within OLJFJH_04810at 946.047 kb on + strand, within OLJFJH_04810at 946.048 kb on - strand, within OLJFJH_04810at 946.048 kb on - strand, within OLJFJH_04810

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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943,072 - OLJFJH_04800 0.57 +1.5
943,083 + OLJFJH_04800 0.58 +0.3
943,159 + OLJFJH_04800 0.63 +0.2
943,160 - OLJFJH_04800 0.63 +0.9
943,255 + OLJFJH_04800 0.69 -1.5
943,255 + OLJFJH_04800 0.69 +1.9
943,305 - OLJFJH_04800 0.73 -0.1
943,341 + OLJFJH_04800 0.75 -0.1
943,341 + OLJFJH_04800 0.75 +0.8
943,341 + OLJFJH_04800 0.75 +1.9
943,342 - OLJFJH_04800 0.75 -0.5
943,342 - OLJFJH_04800 0.75 +0.4
943,356 + OLJFJH_04800 0.76 -0.7
943,479 + OLJFJH_04800 0.85 -0.1
943,507 + OLJFJH_04800 0.86 +3.9
943,507 + OLJFJH_04800 0.86 +0.5
943,507 + OLJFJH_04800 0.86 -0.1
943,508 - OLJFJH_04800 0.87 -0.9
943,508 - OLJFJH_04800 0.87 +0.7
943,508 - OLJFJH_04800 0.87 +1.5
943,668 - +0.3
943,737 - -0.0
943,737 - -0.6
943,809 + -0.2
943,809 + +1.5
943,904 + +0.9
943,923 + +2.6
944,033 + +0.5
944,082 - -0.0
944,144 + OLJFJH_04805 0.11 -0.5
944,145 - OLJFJH_04805 0.11 +1.2
944,145 - OLJFJH_04805 0.11 -0.3
944,145 - OLJFJH_04805 0.11 -0.4
944,275 - OLJFJH_04805 0.21 +0.5
944,334 - OLJFJH_04805 0.26 +1.9
944,334 - OLJFJH_04805 0.26 +1.1
944,356 + OLJFJH_04805 0.28 +1.5
944,357 - OLJFJH_04805 0.28 +1.8
944,424 - OLJFJH_04805 0.33 +2.8
944,424 - OLJFJH_04805 0.33 -0.2
944,424 - OLJFJH_04805 0.33 +0.4
944,454 - OLJFJH_04805 0.35 -0.5
944,513 + OLJFJH_04805 0.40 -0.8
944,513 + OLJFJH_04805 0.40 +0.1
944,516 - OLJFJH_04805 0.40 -1.4
944,598 - OLJFJH_04805 0.47 -1.3
944,599 + OLJFJH_04805 0.47 +0.2
944,600 - OLJFJH_04805 0.47 +0.8
944,600 - OLJFJH_04805 0.47 +0.0
944,600 - OLJFJH_04805 0.47 +0.9
944,600 - OLJFJH_04805 0.47 +0.2
944,600 - OLJFJH_04805 0.47 -0.7
944,609 + OLJFJH_04805 0.47 +1.6
944,647 + OLJFJH_04805 0.50 +0.9
944,647 + OLJFJH_04805 0.50 +0.4
944,647 + OLJFJH_04805 0.50 +0.8
944,648 - OLJFJH_04805 0.51 -0.3
944,648 - OLJFJH_04805 0.51 -0.4
944,651 + OLJFJH_04805 0.51 +2.2
944,708 + OLJFJH_04805 0.55 -0.1
944,708 + OLJFJH_04805 0.55 -0.0
944,709 - OLJFJH_04805 0.55 -0.9
944,709 - OLJFJH_04805 0.55 +1.4
944,753 + OLJFJH_04805 0.59 +0.6
944,754 - OLJFJH_04805 0.59 +0.8
944,757 + OLJFJH_04805 0.59 -0.6
945,080 + OLJFJH_04805 0.84 +0.7
945,080 + OLJFJH_04805 0.84 -0.1
945,134 + OLJFJH_04805 0.89 +0.2
945,251 - +0.6
945,279 - -0.1
945,299 + +0.8
945,303 + +0.3
945,304 - +0.3
945,304 - -0.9
945,305 + +1.0
945,350 + +0.0
945,351 - +0.1
945,351 - +1.0
945,354 + -0.6
945,354 + +1.3
945,354 + +2.2
945,355 - +0.5
945,356 + +0.5
945,356 + -0.4
945,356 + -1.1
945,356 + +1.6
945,357 - -0.0
945,383 + +0.4
945,384 - +1.2
945,497 + -2.1
945,644 + +5.9
945,665 - -1.4
945,686 + OLJFJH_04810 0.11 -0.3
945,686 + OLJFJH_04810 0.11 +0.7
945,686 + OLJFJH_04810 0.11 +1.1
945,709 - OLJFJH_04810 0.12 +2.9
945,722 + OLJFJH_04810 0.13 +0.2
945,723 - OLJFJH_04810 0.13 -0.2
946,047 + OLJFJH_04810 0.29 +0.2
946,048 - OLJFJH_04810 0.29 +0.2
946,048 - OLJFJH_04810 0.29 -1.9

Or see this region's nucleotide sequence