Strain Fitness in Erwinia amylovora T8 around OLJFJH_04575

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04570 and OLJFJH_04575 are separated by 48 nucleotidesOLJFJH_04575 and OLJFJH_04580 are separated by 258 nucleotides OLJFJH_04570: OLJFJH_04570 - hypothetical protein, at 892,704 to 892,955 _04570 OLJFJH_04575: OLJFJH_04575 - Transposase (Partial), at 893,004 to 893,126 _04575 OLJFJH_04580: OLJFJH_04580 - alpha/beta hydrolase, at 893,385 to 894,206 _04580 Position (kb) 893 894Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 892.017 kb on + strandat 892.017 kb on + strandat 892.017 kb on + strandat 892.018 kb on - strandat 892.049 kb on + strandat 892.078 kb on - strandat 892.078 kb on - strandat 892.079 kb on + strandat 892.079 kb on + strandat 892.080 kb on - strandat 892.080 kb on - strandat 892.083 kb on + strandat 892.083 kb on + strandat 892.083 kb on + strandat 892.083 kb on + strandat 892.084 kb on - strandat 892.084 kb on - strandat 892.084 kb on - strandat 892.113 kb on - strandat 892.366 kb on - strandat 892.366 kb on - strandat 892.366 kb on - strandat 892.516 kb on + strandat 892.530 kb on - strandat 892.576 kb on + strandat 892.580 kb on + strandat 892.580 kb on + strandat 892.580 kb on + strandat 892.583 kb on + strandat 892.588 kb on + strandat 892.589 kb on - strandat 892.593 kb on - strandat 892.605 kb on + strandat 892.698 kb on + strandat 892.698 kb on + strandat 892.698 kb on + strandat 892.698 kb on + strandat 892.699 kb on - strandat 892.754 kb on + strand, within OLJFJH_04570at 892.789 kb on + strand, within OLJFJH_04570at 892.789 kb on + strand, within OLJFJH_04570at 892.790 kb on - strand, within OLJFJH_04570at 892.790 kb on - strand, within OLJFJH_04570at 892.941 kb on - strandat 892.946 kb on + strandat 892.947 kb on - strandat 892.977 kb on + strandat 892.984 kb on + strandat 893.072 kb on - strand, within OLJFJH_04575at 893.124 kb on + strandat 893.176 kb on - strandat 893.231 kb on - strandat 893.422 kb on - strandat 893.425 kb on - strandat 893.476 kb on + strand, within OLJFJH_04580at 893.476 kb on + strand, within OLJFJH_04580at 893.535 kb on - strand, within OLJFJH_04580at 893.586 kb on + strand, within OLJFJH_04580at 893.588 kb on + strand, within OLJFJH_04580at 893.588 kb on + strand, within OLJFJH_04580at 893.588 kb on + strand, within OLJFJH_04580at 893.588 kb on + strand, within OLJFJH_04580at 893.588 kb on + strand, within OLJFJH_04580at 893.588 kb on + strand, within OLJFJH_04580at 893.589 kb on - strand, within OLJFJH_04580at 893.592 kb on + strand, within OLJFJH_04580at 893.592 kb on + strand, within OLJFJH_04580at 893.592 kb on + strand, within OLJFJH_04580at 893.592 kb on + strand, within OLJFJH_04580at 893.592 kb on + strand, within OLJFJH_04580at 893.593 kb on - strand, within OLJFJH_04580at 893.593 kb on - strand, within OLJFJH_04580at 893.593 kb on - strand, within OLJFJH_04580at 893.597 kb on + strand, within OLJFJH_04580at 893.598 kb on - strand, within OLJFJH_04580at 893.612 kb on + strand, within OLJFJH_04580at 893.612 kb on + strand, within OLJFJH_04580at 893.613 kb on - strand, within OLJFJH_04580at 893.695 kb on - strand, within OLJFJH_04580at 893.695 kb on - strand, within OLJFJH_04580at 893.695 kb on - strand, within OLJFJH_04580at 893.874 kb on + strand, within OLJFJH_04580at 893.958 kb on - strand, within OLJFJH_04580at 894.123 kb on + strand, within OLJFJH_04580

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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892,017 + +0.0
892,017 + -1.6
892,017 + -0.2
892,018 - +0.3
892,049 + +0.8
892,078 - +1.3
892,078 - -0.3
892,079 + +0.7
892,079 + +0.1
892,080 - -1.6
892,080 - -1.6
892,083 + -0.5
892,083 + +0.7
892,083 + +1.3
892,083 + +0.7
892,084 - -0.5
892,084 - -0.3
892,084 - +1.1
892,113 - -0.1
892,366 - +1.9
892,366 - +1.0
892,366 - -2.1
892,516 + -0.1
892,530 - +2.8
892,576 + -0.8
892,580 + -0.8
892,580 + +0.3
892,580 + +0.1
892,583 + -0.4
892,588 + -0.3
892,589 - +1.7
892,593 - -0.6
892,605 + +0.1
892,698 + -0.1
892,698 + -0.6
892,698 + -0.1
892,698 + +0.2
892,699 - -0.0
892,754 + OLJFJH_04570 0.20 -0.1
892,789 + OLJFJH_04570 0.34 -0.1
892,789 + OLJFJH_04570 0.34 -0.1
892,790 - OLJFJH_04570 0.34 -0.0
892,790 - OLJFJH_04570 0.34 +1.0
892,941 - -1.9
892,946 + -0.7
892,947 - -1.0
892,977 + -0.4
892,984 + -1.1
893,072 - OLJFJH_04575 0.55 -1.7
893,124 + -2.4
893,176 - +4.8
893,231 - +0.2
893,422 - +2.4
893,425 - +1.6
893,476 + OLJFJH_04580 0.11 +2.0
893,476 + OLJFJH_04580 0.11 -0.1
893,535 - OLJFJH_04580 0.18 +0.2
893,586 + OLJFJH_04580 0.24 +2.0
893,588 + OLJFJH_04580 0.25 +0.6
893,588 + OLJFJH_04580 0.25 -0.5
893,588 + OLJFJH_04580 0.25 +0.0
893,588 + OLJFJH_04580 0.25 +1.3
893,588 + OLJFJH_04580 0.25 +1.4
893,588 + OLJFJH_04580 0.25 -0.7
893,589 - OLJFJH_04580 0.25 +0.3
893,592 + OLJFJH_04580 0.25 +0.4
893,592 + OLJFJH_04580 0.25 -1.4
893,592 + OLJFJH_04580 0.25 -1.0
893,592 + OLJFJH_04580 0.25 +0.1
893,592 + OLJFJH_04580 0.25 +2.1
893,593 - OLJFJH_04580 0.25 -0.4
893,593 - OLJFJH_04580 0.25 -1.1
893,593 - OLJFJH_04580 0.25 -0.1
893,597 + OLJFJH_04580 0.26 +0.5
893,598 - OLJFJH_04580 0.26 -0.3
893,612 + OLJFJH_04580 0.28 +0.3
893,612 + OLJFJH_04580 0.28 +0.4
893,613 - OLJFJH_04580 0.28 +1.0
893,695 - OLJFJH_04580 0.38 +0.8
893,695 - OLJFJH_04580 0.38 +0.1
893,695 - OLJFJH_04580 0.38 -0.1
893,874 + OLJFJH_04580 0.59 -1.5
893,958 - OLJFJH_04580 0.70 -0.3
894,123 + OLJFJH_04580 0.90 +2.0

Or see this region's nucleotide sequence