Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_03480 and OLJFJH_03485 are separated by 627 nucleotides OLJFJH_03485 and OLJFJH_03490 overlap by 35 nucleotides OLJFJH_03490 and OLJFJH_03495 are separated by 0 nucleotides
OLJFJH_03480: OLJFJH_03480 - Integrase/recombinase includes phage integrase, at 673,337 to 674,299
_03480
OLJFJH_03485: OLJFJH_03485 - translocase, at 674,927 to 675,319
_03485
OLJFJH_03490: OLJFJH_03490 - glycosyltransferase, at 675,285 to 676,208
_03490
OLJFJH_03495: OLJFJH_03495 - Glucosyl transferase GtrII, at 676,209 to 677,651
_03495
Position (kb) 675
676
677 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 674.298 kb on - strand at 674.298 kb on - strand at 674.342 kb on + strand at 674.343 kb on - strand at 674.353 kb on + strand at 674.364 kb on - strand at 674.364 kb on - strand at 674.409 kb on + strand at 674.410 kb on - strand at 674.476 kb on + strand at 674.476 kb on + strand at 674.620 kb on - strand at 674.716 kb on - strand at 674.723 kb on - strand at 674.825 kb on + strand at 674.971 kb on + strand, within OLJFJH_03485 at 674.971 kb on + strand, within OLJFJH_03485 at 675.001 kb on - strand, within OLJFJH_03485 at 675.129 kb on + strand, within OLJFJH_03485 at 675.178 kb on - strand, within OLJFJH_03485 at 675.240 kb on + strand, within OLJFJH_03485 at 675.250 kb on + strand, within OLJFJH_03485 at 675.255 kb on - strand, within OLJFJH_03485 at 675.525 kb on - strand, within OLJFJH_03490 at 675.528 kb on + strand, within OLJFJH_03490 at 675.605 kb on + strand, within OLJFJH_03490 at 675.710 kb on + strand, within OLJFJH_03490 at 675.804 kb on - strand, within OLJFJH_03490 at 675.855 kb on - strand, within OLJFJH_03490 at 675.857 kb on - strand, within OLJFJH_03490 at 675.975 kb on + strand, within OLJFJH_03490 at 675.975 kb on + strand, within OLJFJH_03490 at 676.073 kb on + strand, within OLJFJH_03490 at 676.138 kb on - strand at 676.405 kb on - strand, within OLJFJH_03495 at 676.428 kb on - strand, within OLJFJH_03495 at 676.428 kb on - strand, within OLJFJH_03495 at 676.501 kb on + strand, within OLJFJH_03495 at 676.502 kb on - strand, within OLJFJH_03495 at 676.572 kb on + strand, within OLJFJH_03495 at 676.744 kb on + strand, within OLJFJH_03495 at 676.813 kb on + strand, within OLJFJH_03495 at 676.879 kb on + strand, within OLJFJH_03495
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3 remove 674,298 - +0.9 674,298 - +1.2 674,342 + -0.2 674,343 - -0.7 674,353 + -0.9 674,364 - -0.2 674,364 - +0.7 674,409 + +2.0 674,410 - +1.6 674,476 + +3.9 674,476 + -0.3 674,620 - -2.3 674,716 - -1.2 674,723 - +1.1 674,825 + -1.3 674,971 + OLJFJH_03485 0.11 -2.0 674,971 + OLJFJH_03485 0.11 +0.5 675,001 - OLJFJH_03485 0.19 +2.7 675,129 + OLJFJH_03485 0.51 -0.0 675,178 - OLJFJH_03485 0.64 +1.0 675,240 + OLJFJH_03485 0.80 +1.4 675,250 + OLJFJH_03485 0.82 +1.4 675,255 - OLJFJH_03485 0.83 -1.3 675,525 - OLJFJH_03490 0.26 -0.6 675,528 + OLJFJH_03490 0.26 +0.7 675,605 + OLJFJH_03490 0.35 +0.1 675,710 + OLJFJH_03490 0.46 +0.4 675,804 - OLJFJH_03490 0.56 -0.5 675,855 - OLJFJH_03490 0.62 -0.5 675,857 - OLJFJH_03490 0.62 +0.7 675,975 + OLJFJH_03490 0.75 -1.0 675,975 + OLJFJH_03490 0.75 -0.7 676,073 + OLJFJH_03490 0.85 -0.9 676,138 - +0.4 676,405 - OLJFJH_03495 0.14 -2.9 676,428 - OLJFJH_03495 0.15 -0.7 676,428 - OLJFJH_03495 0.15 +2.2 676,501 + OLJFJH_03495 0.20 -0.7 676,502 - OLJFJH_03495 0.20 +0.3 676,572 + OLJFJH_03495 0.25 -2.8 676,744 + OLJFJH_03495 0.37 +0.3 676,813 + OLJFJH_03495 0.42 -0.1 676,879 + OLJFJH_03495 0.46 +1.8
Or see this region's nucleotide sequence