Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_02620 and OLJFJH_02625 are separated by 204 nucleotides OLJFJH_02625 and OLJFJH_02630 are separated by 37 nucleotides OLJFJH_02630 and OLJFJH_02635 are separated by 110 nucleotides OLJFJH_02635 and OLJFJH_02640 are separated by 180 nucleotides
OLJFJH_02620: OLJFJH_02620 - C4-dicarboxylate ABC transporter, at 474,449 to 475,750
_02620
OLJFJH_02625: OLJFJH_02625 - protein-disulfide reductase DsbD, at 475,955 to 477,670
_02625
OLJFJH_02630: OLJFJH_02630 - transcriptional regulator, at 477,708 to 478,283
_02630
OLJFJH_02635: OLJFJH_02635 - tRNA-Phe, at 478,394 to 478,469
_02635
OLJFJH_02640: OLJFJH_02640 - site-specific integrase, at 478,650 to 479,663
_02640
Position (kb) 475
476
477
478 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 475.009 kb on + strand, within OLJFJH_02620 at 475.010 kb on - strand, within OLJFJH_02620 at 475.159 kb on - strand, within OLJFJH_02620 at 475.222 kb on + strand, within OLJFJH_02620 at 475.223 kb on - strand, within OLJFJH_02620 at 475.239 kb on + strand, within OLJFJH_02620 at 475.239 kb on + strand, within OLJFJH_02620 at 475.239 kb on + strand, within OLJFJH_02620 at 475.243 kb on + strand, within OLJFJH_02620 at 475.243 kb on + strand, within OLJFJH_02620 at 475.244 kb on - strand, within OLJFJH_02620 at 475.244 kb on - strand, within OLJFJH_02620 at 475.273 kb on + strand, within OLJFJH_02620 at 475.372 kb on + strand, within OLJFJH_02620 at 475.373 kb on - strand, within OLJFJH_02620 at 475.373 kb on - strand, within OLJFJH_02620 at 475.390 kb on + strand, within OLJFJH_02620 at 475.748 kb on + strand at 475.749 kb on - strand at 475.869 kb on + strand at 475.869 kb on + strand at 475.869 kb on + strand at 475.869 kb on + strand at 475.870 kb on - strand at 475.870 kb on - strand at 475.872 kb on + strand at 475.943 kb on + strand at 475.944 kb on - strand at 475.947 kb on + strand at 475.947 kb on + strand at 475.959 kb on + strand at 476.128 kb on - strand, within OLJFJH_02625 at 476.141 kb on + strand, within OLJFJH_02625 at 476.142 kb on - strand, within OLJFJH_02625 at 476.142 kb on - strand, within OLJFJH_02625 at 476.142 kb on - strand, within OLJFJH_02625 at 476.509 kb on + strand, within OLJFJH_02625 at 476.509 kb on + strand, within OLJFJH_02625 at 476.609 kb on + strand, within OLJFJH_02625 at 476.609 kb on + strand, within OLJFJH_02625 at 476.609 kb on + strand, within OLJFJH_02625 at 476.609 kb on + strand, within OLJFJH_02625 at 476.609 kb on + strand, within OLJFJH_02625 at 476.609 kb on + strand, within OLJFJH_02625 at 476.609 kb on + strand, within OLJFJH_02625 at 476.610 kb on - strand, within OLJFJH_02625 at 476.610 kb on - strand, within OLJFJH_02625 at 476.610 kb on - strand, within OLJFJH_02625 at 476.610 kb on - strand, within OLJFJH_02625 at 476.610 kb on - strand, within OLJFJH_02625 at 476.610 kb on - strand, within OLJFJH_02625 at 476.610 kb on - strand, within OLJFJH_02625 at 476.613 kb on + strand, within OLJFJH_02625 at 476.614 kb on - strand, within OLJFJH_02625 at 476.633 kb on + strand, within OLJFJH_02625 at 476.633 kb on + strand, within OLJFJH_02625 at 476.633 kb on + strand, within OLJFJH_02625 at 476.635 kb on + strand, within OLJFJH_02625 at 476.689 kb on - strand, within OLJFJH_02625 at 476.900 kb on - strand, within OLJFJH_02625 at 476.915 kb on + strand, within OLJFJH_02625 at 476.916 kb on - strand, within OLJFJH_02625 at 476.916 kb on - strand, within OLJFJH_02625 at 476.916 kb on - strand, within OLJFJH_02625 at 476.916 kb on - strand, within OLJFJH_02625 at 476.960 kb on + strand, within OLJFJH_02625 at 476.961 kb on - strand, within OLJFJH_02625 at 476.961 kb on - strand, within OLJFJH_02625 at 476.961 kb on - strand, within OLJFJH_02625 at 476.961 kb on - strand, within OLJFJH_02625 at 477.055 kb on - strand, within OLJFJH_02625 at 477.094 kb on - strand, within OLJFJH_02625 at 477.178 kb on + strand, within OLJFJH_02625 at 477.178 kb on + strand, within OLJFJH_02625 at 477.382 kb on + strand, within OLJFJH_02625 at 477.399 kb on - strand, within OLJFJH_02625 at 477.433 kb on + strand, within OLJFJH_02625 at 477.433 kb on + strand, within OLJFJH_02625 at 477.434 kb on - strand, within OLJFJH_02625 at 477.434 kb on - strand, within OLJFJH_02625 at 477.434 kb on - strand, within OLJFJH_02625 at 477.434 kb on - strand, within OLJFJH_02625 at 477.438 kb on - strand, within OLJFJH_02625 at 477.459 kb on + strand, within OLJFJH_02625 at 477.479 kb on - strand, within OLJFJH_02625 at 477.490 kb on - strand, within OLJFJH_02625 at 477.501 kb on + strand at 477.501 kb on + strand at 477.502 kb on - strand at 477.502 kb on - strand at 477.508 kb on + strand at 477.509 kb on - strand at 477.509 kb on - strand at 477.512 kb on - strand at 477.536 kb on - strand at 477.668 kb on + strand at 477.668 kb on + strand at 477.673 kb on - strand at 477.685 kb on - strand at 477.804 kb on + strand, within OLJFJH_02630 at 477.806 kb on + strand, within OLJFJH_02630 at 477.806 kb on + strand, within OLJFJH_02630 at 477.807 kb on - strand, within OLJFJH_02630 at 477.807 kb on - strand, within OLJFJH_02630 at 477.807 kb on - strand, within OLJFJH_02630 at 477.807 kb on - strand, within OLJFJH_02630 at 478.026 kb on + strand, within OLJFJH_02630 at 478.026 kb on + strand, within OLJFJH_02630 at 478.027 kb on - strand, within OLJFJH_02630 at 478.236 kb on + strand at 478.238 kb on + strand at 478.238 kb on + strand at 478.239 kb on - strand at 478.239 kb on - strand at 478.240 kb on + strand at 478.241 kb on - strand at 478.241 kb on - strand at 478.241 kb on - strand at 478.241 kb on - strand at 478.241 kb on - strand at 478.276 kb on + strand at 478.306 kb on - strand at 478.381 kb on - strand at 478.470 kb on + strand at 478.470 kb on + strand at 478.470 kb on + strand at 478.470 kb on + strand at 478.470 kb on + strand at 478.471 kb on - strand at 478.471 kb on - strand at 478.471 kb on - strand at 478.471 kb on - strand at 478.621 kb on - strand at 478.631 kb on - strand at 478.645 kb on + strand at 478.669 kb on - strand at 478.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3 remove 475,009 + OLJFJH_02620 0.43 -0.2 475,010 - OLJFJH_02620 0.43 -1.1 475,159 - OLJFJH_02620 0.55 +0.1 475,222 + OLJFJH_02620 0.59 -2.1 475,223 - OLJFJH_02620 0.59 -0.6 475,239 + OLJFJH_02620 0.61 -0.0 475,239 + OLJFJH_02620 0.61 -1.9 475,239 + OLJFJH_02620 0.61 -1.2 475,243 + OLJFJH_02620 0.61 +0.6 475,243 + OLJFJH_02620 0.61 -0.5 475,244 - OLJFJH_02620 0.61 +1.4 475,244 - OLJFJH_02620 0.61 -1.2 475,273 + OLJFJH_02620 0.63 +1.0 475,372 + OLJFJH_02620 0.71 +0.1 475,373 - OLJFJH_02620 0.71 -0.7 475,373 - OLJFJH_02620 0.71 -1.1 475,390 + OLJFJH_02620 0.72 -0.5 475,748 + +1.0 475,749 - +0.8 475,869 + +2.5 475,869 + +0.8 475,869 + +0.8 475,869 + +0.8 475,870 - +0.0 475,870 - -0.8 475,872 + +0.7 475,943 + +1.6 475,944 - -0.0 475,947 + -1.0 475,947 + -1.1 475,959 + -0.2 476,128 - OLJFJH_02625 0.10 -0.6 476,141 + OLJFJH_02625 0.11 -0.7 476,142 - OLJFJH_02625 0.11 +0.6 476,142 - OLJFJH_02625 0.11 -1.2 476,142 - OLJFJH_02625 0.11 +0.1 476,509 + OLJFJH_02625 0.32 +0.7 476,509 + OLJFJH_02625 0.32 +0.8 476,609 + OLJFJH_02625 0.38 -2.2 476,609 + OLJFJH_02625 0.38 +0.9 476,609 + OLJFJH_02625 0.38 -0.4 476,609 + OLJFJH_02625 0.38 -2.2 476,609 + OLJFJH_02625 0.38 -0.0 476,609 + OLJFJH_02625 0.38 +0.7 476,609 + OLJFJH_02625 0.38 -0.2 476,610 - OLJFJH_02625 0.38 +1.1 476,610 - OLJFJH_02625 0.38 -0.1 476,610 - OLJFJH_02625 0.38 +1.9 476,610 - OLJFJH_02625 0.38 +0.1 476,610 - OLJFJH_02625 0.38 +1.0 476,610 - OLJFJH_02625 0.38 +0.6 476,610 - OLJFJH_02625 0.38 +0.8 476,613 + OLJFJH_02625 0.38 -0.0 476,614 - OLJFJH_02625 0.38 +1.4 476,633 + OLJFJH_02625 0.40 +0.8 476,633 + OLJFJH_02625 0.40 +0.1 476,633 + OLJFJH_02625 0.40 -1.1 476,635 + OLJFJH_02625 0.40 -0.2 476,689 - OLJFJH_02625 0.43 +0.6 476,900 - OLJFJH_02625 0.55 +2.1 476,915 + OLJFJH_02625 0.56 -2.3 476,916 - OLJFJH_02625 0.56 -2.2 476,916 - OLJFJH_02625 0.56 +0.9 476,916 - OLJFJH_02625 0.56 -0.5 476,916 - OLJFJH_02625 0.56 +0.4 476,960 + OLJFJH_02625 0.59 +0.2 476,961 - OLJFJH_02625 0.59 +0.5 476,961 - OLJFJH_02625 0.59 -0.2 476,961 - OLJFJH_02625 0.59 +0.6 476,961 - OLJFJH_02625 0.59 +0.3 477,055 - OLJFJH_02625 0.64 +0.0 477,094 - OLJFJH_02625 0.66 -2.2 477,178 + OLJFJH_02625 0.71 -0.6 477,178 + OLJFJH_02625 0.71 +0.0 477,382 + OLJFJH_02625 0.83 +3.2 477,399 - OLJFJH_02625 0.84 +1.6 477,433 + OLJFJH_02625 0.86 -1.8 477,433 + OLJFJH_02625 0.86 +0.2 477,434 - OLJFJH_02625 0.86 -0.5 477,434 - OLJFJH_02625 0.86 +0.0 477,434 - OLJFJH_02625 0.86 -1.0 477,434 - OLJFJH_02625 0.86 +0.1 477,438 - OLJFJH_02625 0.86 -1.0 477,459 + OLJFJH_02625 0.88 +0.2 477,479 - OLJFJH_02625 0.89 +1.9 477,490 - OLJFJH_02625 0.89 +0.5 477,501 + +0.8 477,501 + -1.1 477,502 - -0.1 477,502 - -0.2 477,508 + +0.9 477,509 - +2.4 477,509 - -0.6 477,512 - +2.6 477,536 - -0.1 477,668 + +1.5 477,668 + +0.6 477,673 - +1.3 477,685 - -0.7 477,804 + OLJFJH_02630 0.17 +1.1 477,806 + OLJFJH_02630 0.17 -0.6 477,806 + OLJFJH_02630 0.17 +0.1 477,807 - OLJFJH_02630 0.17 +0.1 477,807 - OLJFJH_02630 0.17 +0.4 477,807 - OLJFJH_02630 0.17 +0.1 477,807 - OLJFJH_02630 0.17 +0.0 478,026 + OLJFJH_02630 0.55 -0.3 478,026 + OLJFJH_02630 0.55 -0.4 478,027 - OLJFJH_02630 0.55 +0.3 478,236 + -0.7 478,238 + +0.9 478,238 + +0.3 478,239 - -0.7 478,239 - +0.6 478,240 + +0.2 478,241 - -0.0 478,241 - -0.6 478,241 - -0.9 478,241 - +2.4 478,241 - +0.0 478,276 + -0.4 478,306 - +0.9 478,381 - -0.6 478,470 + -0.6 478,470 + +1.6 478,470 + +0.7 478,470 + -0.1 478,470 + +4.4 478,471 - -1.6 478,471 - -2.8 478,471 - +0.1 478,471 - +0.5 478,621 - +0.8 478,631 - -0.6 478,645 + -1.0 478,669 - -0.7 478,669 - +0.1
Or see this region's nucleotide sequence