Strain Fitness in Erwinia amylovora T8 around OLJFJH_01510

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_01500 and OLJFJH_01505 are separated by 72 nucleotidesOLJFJH_01505 and OLJFJH_01510 are separated by 206 nucleotidesOLJFJH_01510 and OLJFJH_01515 are separated by 105 nucleotidesOLJFJH_01515 and OLJFJH_01520 are separated by 207 nucleotides OLJFJH_01500: OLJFJH_01500 - two-component system response regulator ArcA, at 248,310 to 249,026 _01500 OLJFJH_01505: OLJFJH_01505 - Protein creA, at 249,099 to 249,572 _01505 OLJFJH_01510: OLJFJH_01510 - MDR efflux pump AcrAB transcriptional activator RobA, at 249,779 to 250,663 _01510 OLJFJH_01515: OLJFJH_01515 - hypothetical protein, at 250,769 to 251,128 _01515 OLJFJH_01520: OLJFJH_01520 - 2 3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB, at 251,336 to 251,983 _01520 Position (kb) 249 250 251Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 249.016 kb on + strandat 249.016 kb on + strandat 249.070 kb on - strandat 249.070 kb on - strandat 249.132 kb on - strandat 249.181 kb on + strand, within OLJFJH_01505at 249.181 kb on + strand, within OLJFJH_01505at 249.182 kb on - strand, within OLJFJH_01505at 249.208 kb on + strand, within OLJFJH_01505at 249.209 kb on - strand, within OLJFJH_01505at 249.302 kb on + strand, within OLJFJH_01505at 249.351 kb on - strand, within OLJFJH_01505at 249.458 kb on + strand, within OLJFJH_01505at 249.474 kb on + strand, within OLJFJH_01505at 249.474 kb on + strand, within OLJFJH_01505at 249.549 kb on + strandat 249.553 kb on - strandat 249.608 kb on - strandat 249.608 kb on - strandat 249.648 kb on - strandat 249.648 kb on - strandat 249.649 kb on + strandat 249.650 kb on - strandat 249.700 kb on - strandat 249.725 kb on + strandat 249.726 kb on - strandat 249.745 kb on - strandat 249.775 kb on + strandat 249.776 kb on + strandat 249.776 kb on + strandat 249.777 kb on - strandat 249.778 kb on + strandat 249.778 kb on + strandat 249.779 kb on - strandat 249.800 kb on - strandat 249.876 kb on - strand, within OLJFJH_01510at 249.935 kb on + strand, within OLJFJH_01510at 249.938 kb on - strand, within OLJFJH_01510at 249.959 kb on - strand, within OLJFJH_01510at 249.959 kb on - strand, within OLJFJH_01510at 249.994 kb on + strand, within OLJFJH_01510at 250.145 kb on + strand, within OLJFJH_01510at 250.146 kb on - strand, within OLJFJH_01510at 250.146 kb on - strand, within OLJFJH_01510at 250.146 kb on - strand, within OLJFJH_01510at 250.146 kb on - strand, within OLJFJH_01510at 250.146 kb on - strand, within OLJFJH_01510at 250.146 kb on - strand, within OLJFJH_01510at 250.146 kb on - strand, within OLJFJH_01510at 250.211 kb on + strand, within OLJFJH_01510at 250.212 kb on - strand, within OLJFJH_01510at 250.212 kb on - strand, within OLJFJH_01510at 250.212 kb on - strand, within OLJFJH_01510at 250.212 kb on - strand, within OLJFJH_01510at 250.309 kb on - strand, within OLJFJH_01510at 250.313 kb on + strand, within OLJFJH_01510at 250.370 kb on + strand, within OLJFJH_01510at 250.370 kb on + strand, within OLJFJH_01510at 250.370 kb on + strand, within OLJFJH_01510at 250.371 kb on - strand, within OLJFJH_01510at 250.371 kb on - strand, within OLJFJH_01510at 250.372 kb on + strand, within OLJFJH_01510at 250.373 kb on - strand, within OLJFJH_01510at 250.373 kb on - strand, within OLJFJH_01510at 250.373 kb on - strand, within OLJFJH_01510at 250.375 kb on + strand, within OLJFJH_01510at 250.375 kb on + strand, within OLJFJH_01510at 250.375 kb on + strand, within OLJFJH_01510at 250.376 kb on - strand, within OLJFJH_01510at 250.376 kb on - strand, within OLJFJH_01510at 250.448 kb on + strand, within OLJFJH_01510at 250.448 kb on + strand, within OLJFJH_01510at 250.448 kb on + strand, within OLJFJH_01510at 250.448 kb on + strand, within OLJFJH_01510at 250.449 kb on - strand, within OLJFJH_01510at 250.460 kb on - strand, within OLJFJH_01510at 250.463 kb on + strand, within OLJFJH_01510at 250.464 kb on - strand, within OLJFJH_01510at 250.509 kb on - strand, within OLJFJH_01510at 250.530 kb on + strand, within OLJFJH_01510at 250.530 kb on + strand, within OLJFJH_01510at 250.547 kb on - strand, within OLJFJH_01510at 250.571 kb on + strand, within OLJFJH_01510at 250.571 kb on + strand, within OLJFJH_01510at 250.572 kb on - strand, within OLJFJH_01510at 250.572 kb on - strand, within OLJFJH_01510at 250.572 kb on - strand, within OLJFJH_01510at 250.681 kb on - strandat 250.721 kb on + strandat 250.754 kb on + strandat 250.755 kb on - strandat 250.755 kb on - strandat 250.756 kb on + strandat 250.756 kb on + strandat 250.757 kb on - strandat 250.757 kb on - strandat 250.757 kb on - strandat 250.757 kb on - strandat 250.769 kb on - strandat 250.883 kb on + strand, within OLJFJH_01515at 250.884 kb on - strand, within OLJFJH_01515at 250.944 kb on + strand, within OLJFJH_01515at 250.957 kb on + strand, within OLJFJH_01515at 250.997 kb on - strand, within OLJFJH_01515at 251.040 kb on + strand, within OLJFJH_01515at 251.224 kb on - strandat 251.254 kb on + strandat 251.294 kb on + strandat 251.458 kb on + strand, within OLJFJH_01520at 251.459 kb on - strand, within OLJFJH_01520at 251.459 kb on - strand, within OLJFJH_01520

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
remove
249,016 + +0.6
249,016 + -0.4
249,070 - -1.5
249,070 - -0.4
249,132 - -0.8
249,181 + OLJFJH_01505 0.17 -0.2
249,181 + OLJFJH_01505 0.17 -0.0
249,182 - OLJFJH_01505 0.18 -0.3
249,208 + OLJFJH_01505 0.23 +1.3
249,209 - OLJFJH_01505 0.23 -0.7
249,302 + OLJFJH_01505 0.43 -0.6
249,351 - OLJFJH_01505 0.53 -0.9
249,458 + OLJFJH_01505 0.76 -1.5
249,474 + OLJFJH_01505 0.79 +0.2
249,474 + OLJFJH_01505 0.79 -0.6
249,549 + +1.3
249,553 - -0.4
249,608 - -1.2
249,608 - +0.1
249,648 - -0.2
249,648 - +0.4
249,649 + +0.9
249,650 - +3.4
249,700 - -0.3
249,725 + +1.1
249,726 - -0.3
249,745 - -0.4
249,775 + +1.4
249,776 + -0.9
249,776 + -1.1
249,777 - +0.4
249,778 + -1.3
249,778 + +0.6
249,779 - -0.6
249,800 - -3.4
249,876 - OLJFJH_01510 0.11 -0.2
249,935 + OLJFJH_01510 0.18 -2.1
249,938 - OLJFJH_01510 0.18 -0.2
249,959 - OLJFJH_01510 0.20 -0.7
249,959 - OLJFJH_01510 0.20 +0.4
249,994 + OLJFJH_01510 0.24 -2.4
250,145 + OLJFJH_01510 0.41 +2.4
250,146 - OLJFJH_01510 0.41 -1.1
250,146 - OLJFJH_01510 0.41 -0.6
250,146 - OLJFJH_01510 0.41 +0.2
250,146 - OLJFJH_01510 0.41 -2.0
250,146 - OLJFJH_01510 0.41 -0.6
250,146 - OLJFJH_01510 0.41 +0.4
250,146 - OLJFJH_01510 0.41 -0.9
250,211 + OLJFJH_01510 0.49 -3.6
250,212 - OLJFJH_01510 0.49 -0.4
250,212 - OLJFJH_01510 0.49 -0.4
250,212 - OLJFJH_01510 0.49 -2.4
250,212 - OLJFJH_01510 0.49 -1.8
250,309 - OLJFJH_01510 0.60 -1.4
250,313 + OLJFJH_01510 0.60 -2.2
250,370 + OLJFJH_01510 0.67 -0.2
250,370 + OLJFJH_01510 0.67 -0.3
250,370 + OLJFJH_01510 0.67 +0.9
250,371 - OLJFJH_01510 0.67 -2.3
250,371 - OLJFJH_01510 0.67 -0.0
250,372 + OLJFJH_01510 0.67 -0.5
250,373 - OLJFJH_01510 0.67 +1.4
250,373 - OLJFJH_01510 0.67 -0.3
250,373 - OLJFJH_01510 0.67 -0.5
250,375 + OLJFJH_01510 0.67 +0.2
250,375 + OLJFJH_01510 0.67 -1.5
250,375 + OLJFJH_01510 0.67 -0.1
250,376 - OLJFJH_01510 0.67 +2.7
250,376 - OLJFJH_01510 0.67 -0.6
250,448 + OLJFJH_01510 0.76 +0.6
250,448 + OLJFJH_01510 0.76 +1.4
250,448 + OLJFJH_01510 0.76 -0.9
250,448 + OLJFJH_01510 0.76 -1.1
250,449 - OLJFJH_01510 0.76 -0.8
250,460 - OLJFJH_01510 0.77 -0.5
250,463 + OLJFJH_01510 0.77 -0.4
250,464 - OLJFJH_01510 0.77 +0.9
250,509 - OLJFJH_01510 0.82 +0.6
250,530 + OLJFJH_01510 0.85 -0.1
250,530 + OLJFJH_01510 0.85 -1.1
250,547 - OLJFJH_01510 0.87 -0.7
250,571 + OLJFJH_01510 0.89 -1.5
250,571 + OLJFJH_01510 0.89 +0.6
250,572 - OLJFJH_01510 0.90 -2.4
250,572 - OLJFJH_01510 0.90 -0.7
250,572 - OLJFJH_01510 0.90 -1.3
250,681 - -0.0
250,721 + -0.8
250,754 + +1.4
250,755 - +0.0
250,755 - -0.4
250,756 + -0.5
250,756 + +0.5
250,757 - +1.3
250,757 - -0.2
250,757 - +0.2
250,757 - -2.2
250,769 - +0.1
250,883 + OLJFJH_01515 0.32 -0.3
250,884 - OLJFJH_01515 0.32 -2.9
250,944 + OLJFJH_01515 0.49 +0.8
250,957 + OLJFJH_01515 0.52 -0.5
250,997 - OLJFJH_01515 0.63 +0.6
251,040 + OLJFJH_01515 0.75 -0.1
251,224 - -0.9
251,254 + -1.7
251,294 + -0.3
251,458 + OLJFJH_01520 0.19 -1.6
251,459 - OLJFJH_01520 0.19 +0.0
251,459 - OLJFJH_01520 0.19 -0.8

Or see this region's nucleotide sequence